PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000442310
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 604aa    MW: 67858.5 Da    PI: 7.5489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000442310genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12301347455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h e+E++RR+++N++f+ Lr+++P+       K++ ++ L  Av YI++L+
  MDP0000442310 301 NHVEAEKQRREKLNHRFFVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 347
                    899***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.8E-3320197IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.63E-16295361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.42E-12295351No hitNo description
PROSITE profilePS5088815.77297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9300346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16300362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.200.206.7E-7552584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MEEIISSFCP PDFCQETTFQ QRLQFLVQNV PEWWVYSIFW RASKDSSSDK FPVMGWRTFS  60
EHRDHLASKR SNQVNREVEA LLHDDVMYLD MRLVDHGDVT DSELFYFYTV SLTQSFSASH  120
GNNSNNIFGR AFGSGGFVWL AGDHEFQFYE CERVKEARMH GIQTLVCIAT PCGVVELASL  180
DVIKEDYGLV HLSKSLFGSD GNHNNNNRRL SKHQTSLEGN ILDPILENEL FSADQNELTR  240
QDAGGINEAA APINVGGSSL ESPSNSVGNF TSENTKNKTR SKNRGRSSNN GAASRQSQLS  300
NHVEAEKQRR EKLNHRFFVL RSVVPNVSKM DRSSLLADAV AYINQLKSKV EELDAKVQEQ  360
AQKPKAGNNX SNNLDHQSSQ STSAIVGQHH YSNINFNDNT ISNSNRAAAA AVVEVDVYVK  420
IMGSEAKIRV QSPDQDYPYA KLMSALKGLG LQVYHASISS VKELMIQDVV ARLPYGFTSE  480
EEARGIPRAT LPTKADNEKV VVLNTRADGN TRTLHTISKY RNKQRFEAVA YRSRDEEGGT  540
SIGIIFSNMK KFSYKTLAQY MSNFDEGKKF GHGGFGEVYK GLLLREYLMK LGFHHKINWQ  600
YKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-23111972192Transcription factor MYC3
4rqw_B2e-23111972192Transcription factor MYC3
4rs9_A2e-23111972192Transcription factor MYC3
4yz6_A2e-23111972192Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.269350.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386326.20.0transcription factor bHLH14-like isoform X2
TrEMBLA0A498IMI90.0A0A498IMI9_MALDO; Uncharacterized protein
STRINGXP_008386326.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.16e-59bHLH family protein