PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000442310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 604aa MW: 67858.5 Da PI: 7.5489 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.6e-12 | 301 | 347 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+E++RR+++N++f+ Lr+++P+ K++ ++ L Av YI++L+ MDP0000442310 301 NHVEAEKQRREKLNHRFFVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 347 899***********************6.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.8E-33 | 20 | 197 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 5.63E-16 | 295 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.42E-12 | 295 | 351 | No hit | No description |
PROSITE profile | PS50888 | 15.77 | 297 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 300 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 300 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-14 | 303 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.200.20 | 6.7E-7 | 552 | 584 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MEEIISSFCP PDFCQETTFQ QRLQFLVQNV PEWWVYSIFW RASKDSSSDK FPVMGWRTFS 60 EHRDHLASKR SNQVNREVEA LLHDDVMYLD MRLVDHGDVT DSELFYFYTV SLTQSFSASH 120 GNNSNNIFGR AFGSGGFVWL AGDHEFQFYE CERVKEARMH GIQTLVCIAT PCGVVELASL 180 DVIKEDYGLV HLSKSLFGSD GNHNNNNRRL SKHQTSLEGN ILDPILENEL FSADQNELTR 240 QDAGGINEAA APINVGGSSL ESPSNSVGNF TSENTKNKTR SKNRGRSSNN GAASRQSQLS 300 NHVEAEKQRR EKLNHRFFVL RSVVPNVSKM DRSSLLADAV AYINQLKSKV EELDAKVQEQ 360 AQKPKAGNNX SNNLDHQSSQ STSAIVGQHH YSNINFNDNT ISNSNRAAAA AVVEVDVYVK 420 IMGSEAKIRV QSPDQDYPYA KLMSALKGLG LQVYHASISS VKELMIQDVV ARLPYGFTSE 480 EEARGIPRAT LPTKADNEKV VVLNTRADGN TRTLHTISKY RNKQRFEAVA YRSRDEEGGT 540 SIGIIFSNMK KFSYKTLAQY MSNFDEGKKF GHGGFGEVYK GLLLREYLMK LGFHHKINWQ 600 YKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-23 | 11 | 197 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-23 | 11 | 197 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-23 | 11 | 197 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-23 | 11 | 197 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.26935 | 0.0 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008386326.2 | 0.0 | transcription factor bHLH14-like isoform X2 | ||||
TrEMBL | A0A498IMI9 | 0.0 | A0A498IMI9_MALDO; Uncharacterized protein | ||||
STRING | XP_008386326.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 6e-59 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000442310 |