PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000441376
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 697aa    MW: 77410.1 Da    PI: 6.0779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000441376genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.61.5e-1323316951374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsevsPilkfs 94 
                    l +lLl cAeav+++d  la+++L +l+  ++p gd+mqR+a++ft AL+arla + ++  +a +p++ s  + ns e l+++++ ++++P++kf+
  MDP0000441376 331 LLHLLLVCAEAVAKEDYMLARRYLHHLNRVVTPLGDSMQRVASCFTDALSARLAATLTTNPRASAPQPFSpfPPNSLEILKIYQIVYQACPYIKFA 426
                    579***************************************************966555555544444411456********************* PP

           GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e+++etg+ L+++A +l+vpfef++ v ++ledl+
  MDP0000441376 427 HFTANQAIFEAFESEERVHVIDLDILQGYQWPAFMQALAARPSGAPFLRITGVGP----CIEAVKETGRCLTELALSLHVPFEFHA-VGEQLEDLK 517
                    *******************************************************....***************************.7******** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    +++++ + gEalaVn v +lhr++       +   ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE
  MDP0000441376 518 PHMFNRRIGEALAVNTVNRLHRVP------VNXLGNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVE 607
                    ***********************9......333558************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    + ++++ei+n+vacegaer+erhe+lekWr+ +e+ GFk+v+ls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  MDP0000441376 608 QYIFAPEIRNIVACEGAERTERHERLEKWRKVMESKGFKSVALSANAVTQSKILLGLYSCDGYRMTEDNGCLLLGWQDRSIMAASAWR 695
                    ***************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.646305675IPR005202Transcription factor GRAS
PfamPF035145.3E-130331695IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MGSIKSENSC SSDLXPPSPT ESTTMSMSIS ESKKITIPPS SELDQQSTLT PPSLNFPTLK  60
FELDDVEVQS PDHSIWESLF SEQFETDFMI LSPVPNNMPN SPQNGGSATH QNYNYNYAQS  120
MQGQSLSGCS SPRFSPHLGA FSSTHNPKGK GLSPLRRVFN SPVNQYMEPA DQNTQSLPVP  180
VSIEDFLDDY ERDGFIXAFP TTASSKISGS SSQSYNHHDH LPASSTVPSA TLDCMPMXNS  240
SRFSRSASEA SLVTAGNSQL TQERSSGSGY QQMSGAPLSQ QLQQERMQEK QQQPQKQHHH  300
QPQQQQNLHY NMMAPAIPMA HEQEQDSGLQ LLHLLLVCAE AVAKEDYMLA RRYLHHLNRV  360
VTPLGDSMQR VASCFTDALS ARLAATLTTN PRASAPQPFS PFPPNSLEIL KIYQIVYQAC  420
PYIKFAHFTA NQAIFEAFES EERVHVIDLD ILQGYQWPAF MQALAARPSG APFLRITGVG  480
PCIEAVKETG RCLTELALSL HVPFEFHAVG EQLEDLKPHM FNRRIGEALA VNTVNRLHRV  540
PVNXLGNLLA MIRDQAPNIV TLVEQEASHN GPYFLGRFLE ALHYYSAIFD SLDATFPPDS  600
AQRAKVEQYI FAPEIRNIVA CEGAERTERH ERLEKWRKVM ESKGFKSVAL SANAVTQSKI  660
LLGLYSCDGY RMTEDNGCLL LGWQDRSIMA ASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-9633869426378Protein SCARECROW
5b3h_A1e-9633869425377Protein SCARECROW
5b3h_D1e-9633869425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379744.20.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A498J0I50.0A0A498J0I5_MALDO; Uncharacterized protein
STRINGXP_008379744.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-90RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]