PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000436338
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 244aa    MW: 27698.1 Da    PI: 8.1735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000436338genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-1092132954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r RR+ri ++f  L++l+P       +Kl+ +++Le+A++Y+k L
  MDP0000436338  92 ARERRHRISDRFKILQSLVPGG-----TKLDTVSMLEEAIHYVKFL 132
                    699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4483132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1388143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1189136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1289138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-1389136No hitNo description
PfamPF000108.6E-893132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSMHLRSWFT KMVCCVRXFA KLTTYWGRWC SPFXLEEPGK WVSPSKWTTS LPLTLTQIIS  60
PTLLSVTKNN RGGGKNKSNG VRLSTDPQSV AARERRHRIS DRFKILQSLV PGGTKLDTVS  120
MLEEAIHYVK FLKTQIWLHQ TMINFAEDYH DPSSSSSPPS MLMDIPAHDH DLHPIGCLDH  180
DLLPTGCFDH LSHQLHQQTH DLYAHGDVIS TDASVQPPSP PAVNIPIMPE YNCFQRSRNN  240
WQY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4647486e-56AM464748.2 Vitis vinifera contig VV78X157215.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028957127.11e-131transcription factor LAX PANICLE 1-like
TrEMBLA0A498K2E01e-129A0A498K2E0_MALDO; Uncharacterized protein
STRINGXP_009348213.11e-113(Pyrus x bretschneideri)
STRINGXP_009376442.11e-113(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.15e-31APRATAXIN-like