PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000435971

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bZIP

Protein Properties

Length: 450aa MW: 49266.3 Da PI: 6.2661

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000435971	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.1	1.4e-11	231	281	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l++ MDP0000435971 231 KRAKRIWANRQSAARSKERKMRYIAELEQKVQTLQTEATSLSAQLTLLQDI 281 9******************************************99999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-10	227	311	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.898	229	280	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-10	231	282	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.46E-11	231	282	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.1E-11	231	280	No hit	No description
CDD	cd14703	1.29E-23	232	279	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MDKDKSPAHG GGFPPPSGRY XGFLPAGAAF NVKPEPSSSS PFPPLASGAS ADSGXFGHGM 60 SAESSHFSHD ISRMPDNPPR KLGHRRAHSE ILTLPDDISF DSDLGVVGGA DGPSFSDDTE 120 EDLFSMYLDM EKFNSSSATS SFQFGEPSSS AATPAXAIAP SSRAPTXSAE NIAIGSNERP 180 RVRHQHSQSM DGSSTIKPEM LVSSSEDINA ADSKKALSAA KLAELALVDP KRAKRIWANR 240 QSAARSKERK MRYIAELEQK VQTLQTEATS LSAQLTLLQD ISDYSYGFLY EQRDTNGLTA 300 ENSELKLRLQ TMEQQVHLQD ALNDALKEEI QHLKVMTGQA TXNGGPMMNY ASFGGAGQQQ 360 FYPNNQAMHT LLTAQQFQQL QIHSQKQQHQ FQQHQLHQLQ QQQMQQHHQX QQQQQQQQQQ 420 SGELKIGGSV PXPSQKDNTS EVNQSVXKD*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MDKDKSPAHG GGFPPPSGRY XGFLPAGAAF NVKPEPSSSS PFPPLASGAS ADSGXFGHGM  60
SAESSHFSHD ISRMPDNPPR KLGHRRAHSE ILTLPDDISF DSDLGVVGGA DGPSFSDDTE  120
EDLFSMYLDM EKFNSSSATS SFQFGEPSSS AATPAXAIAP SSRAPTXSAE NIAIGSNERP  180
RVRHQHSQSM DGSSTIKPEM LVSSSEDINA ADSKKALSAA KLAELALVDP KRAKRIWANR  240
QSAARSKERK MRYIAELEQK VQTLQTEATS LSAQLTLLQD ISDYSYGFLY EQRDTNGLTA  300
ENSELKLRLQ TMEQQVHLQD ALNDALKEEI QHLKVMTGQA TXNGGPMMNY ASFGGAGQQQ  360
FYPNNQAMHT LLTAQQFQQL QIHSQKQQHQ FQQHQLHQLQ QQQMQQHHQX QQQQQQQQQQ  420
SGELKIGGSV PXPSQKDNTS EVNQSVXKD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13491	0.0	cell culture\| fruit\| leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007222380.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-152	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	M5XCD0	0.0	M5XCD0_PRUPE; Uncharacterized protein
STRING	EMJ23579	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-136	bZIP family protein

Link Out ? help Back to Top
Phytozome	MDP0000435971

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]