PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000432072

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 859aa MW: 100165 Da PI: 8.0072

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000432072	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49	2e-15	56	162	1	88
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkek.dgkwe 77 ++Y++Y+++ GF +r+ +s+k+ +r++ it+r+fvC +gk+ ++ +k +++ ++ ++gCka++++ ++ ++kw+ MDP0000432072 56 NYYQDYGRQXGFWIRTXSSSKTrSRSDXITSRQFVCAHQGKHVXRNXVhetleenedretcexenMKKMNKNCSTVKCGCKASMRIVHDRwSNKWK 151 69***********9998888578899*********9998877899******998666677788899******99999* PP FAR1 78 vtkleleHnHe 88 + ++ HnH+ MDP0000432072 152 XSVFKDXHNHK 162 ********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.9E-13	56	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.7E-34	281	375	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.002	582	618	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.3E-5	592	615	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0019	593	620	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence Send to blast
MAESVADFAS NSPSISPVQD TVQVENDETC IPNENSKGLK TPYVGMLFDT MEEARNYYQD 60 YGRQXGFWIR TXSSSKTRSR SDXITSRQFV CAHQGKHVXR NXVHETLEEN EDRETCEXEN 120 MKKMNKNCST VKCGCKASMR IVHDRWSNKW KXSVFKDXHN HKPVTPERRM KMKXNKVMPK 180 AXRVLTETFH EENLPXAKVS SIFGGTHIGF NKRDCYNHLX NVXHRQLDGX DAQSVLTYFX 240 KXQAENPHFF YAIQCDENXR ATNFFWVDAR SRMAYHYFGD VVTFDTTYRT NKYDMPFAPF 300 TGVNHHWQSI QFGCAHLQDE TKVTFLWLFE TWLEAIGGRH PITIITEQDL AMKGAIAKVF 360 PNTHHRLCLW HIKKKFAEKL SHVYFKKAKF KIEMKKCTRK TYKIDDFEVK WMALMKEDGL 420 ENDEWDFEVK WXALMKEXXL ENDEWLKSLY EMRSSWVXVY NRRIFFAGMN TTGRSEGINS 480 FFDGFVTPTT NLREFVVKYE QALKKIMERE SDEDFESEHK YRIVNEGEFL LQHAASLYTR 540 NVFNKFKDEW SKVNRYKVEE MPRDNEDHAY IVKSKLGEQE EFVVKLNAQT HKGTCECQNF 600 KFVGILCRHL LKVFVRLDVN TIPEHFILPR WKQEANKFRI MDFKSLVTNX GKEESEALRL 660 SHMCHQATKL ACTAASSNEA YTIFMEAIDE LSKKLSEYSC QDATIASSTK GDTCTNIDSS 720 VPVLLDPYIS QTKGRKKDNI SSSKRRLAEN SCQDENVASS TKGDSLLLLL DPNISQTGKK 780 KDNISNSKRM KSGIELAQQK KKRKCRSCNK LVRHDTRNCP SNPKRRKIES TNEWNEEQED 840 LGEYVESDDX EYLESDDV*

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence Send to blast

MAESVADFAS NSPSISPVQD TVQVENDETC IPNENSKGLK TPYVGMLFDT MEEARNYYQD  60
YGRQXGFWIR TXSSSKTRSR SDXITSRQFV CAHQGKHVXR NXVHETLEEN EDRETCEXEN  120
MKKMNKNCST VKCGCKASMR IVHDRWSNKW KXSVFKDXHN HKPVTPERRM KMKXNKVMPK  180
AXRVLTETFH EENLPXAKVS SIFGGTHIGF NKRDCYNHLX NVXHRQLDGX DAQSVLTYFX  240
KXQAENPHFF YAIQCDENXR ATNFFWVDAR SRMAYHYFGD VVTFDTTYRT NKYDMPFAPF  300
TGVNHHWQSI QFGCAHLQDE TKVTFLWLFE TWLEAIGGRH PITIITEQDL AMKGAIAKVF  360
PNTHHRLCLW HIKKKFAEKL SHVYFKKAKF KIEMKKCTRK TYKIDDFEVK WMALMKEDGL  420
ENDEWDFEVK WXALMKEXXL ENDEWLKSLY EMRSSWVXVY NRRIFFAGMN TTGRSEGINS  480
FFDGFVTPTT NLREFVVKYE QALKKIMERE SDEDFESEHK YRIVNEGEFL LQHAASLYTR  540
NVFNKFKDEW SKVNRYKVEE MPRDNEDHAY IVKSKLGEQE EFVVKLNAQT HKGTCECQNF  600
KFVGILCRHL LKVFVRLDVN TIPEHFILPR WKQEANKFRI MDFKSLVTNX GKEESEALRL  660
SHMCHQATKL ACTAASSNEA YTIFMEAIDE LSKKLSEYSC QDATIASSTK GDTCTNIDSS  720
VPVLLDPYIS QTKGRKKDNI SSSKRRLAEN SCQDENVASS TKGDSLLLLL DPNISQTGKK  780
KDNISNSKRM KSGIELAQQK KKRKCRSCNK LVRHDTRNCP SNPKRRKIES TNEWNEEQED  840
LGEYVESDDX EYLESDDV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028948914.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251QDD0	0.0	A0A251QDD0_PRUPE; Uncharacterized protein
STRING	XP_008351540.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-125	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000432072