PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000429824
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 578aa    MW: 65164 Da    PI: 6.7688
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000429824genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.91.3e-2396195186
       trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                    +Wt+ +v +Li a+ +++++ ++g              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++  ++
  MDP0000429824  96 KWTDTMVSLLIMAVFYIGDEASDGPdptgkkkpaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQGLL 191
                    7*********************9866677788999999**********************************************559999999999 PP

       trihelix  83 dqle 86 
                    ++++
  MDP0000429824 192 EKMD 195
                    9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-2194220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MEANGLFSGM LGLEMPLHQN PQNPHHLMHQ PQMVAYAPHH DPDNHQNPHQ SVKQRHPFAP  60
KSKQIALSDD DEPGFGADDN SNGDNKKKIS PWQRMKWTDT MVSLLIMAVF YIGDEASDGP  120
DPTGKKKPAG GLLQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK RVNDILGKGT  180
ACRVVENQGL LEKMDLAPKM KEEVRKLLNS KHLFFREMCA YHNSCGHETV GGRSNGAHNS  240
PPQVATEPSE IQVWPQPHEQ LQQQRCFHSS ENAQAVANSG RSETKGSKVI KGGSGCEDED  300
EEFEDDDSDD EVVGGGSRGH IGHGNHEDND DNDDNDDNDE RAPQKVPRKE GCFSGSSSST  360
HLMQQLGCEV RVVLQDVSKT PWEKKQWLKT RIIKLQEQQV SYQHRAFELE KQRLKWIKYS  420
GKKERYMERR KLENERRRLE NERMLLVVRG KEFDLLELHH QQQQQNSSNK RNGAIKNEAA  480
EDEESNGQTD ECEVAAQVPQ DMINRGRNHG ARLAQLXAMV IDQRLLRAVK QVXXTVSTEL  540
GLAWARLCTS GASQLLPEFA SAGATEFSTT PGRDLLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387330.20.0uncharacterized protein LOC103449787
TrEMBLA0A498ID160.0A0A498ID16_MALDO; Uncharacterized protein
STRINGXP_008387330.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-80sequence-specific DNA binding transcription factors