PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000429067 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 24836.1 Da PI: 8.068 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.3 | 1.5e-39 | 18 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC k+C++apyf aeq +++fa+vhk+FGasn +kll ++p+++r da+ +l yeA ar+rdPvyG+v++i++lqqq+ +l+aela MDP0000429067 18 PCGACKFLRRKCIKGCIFAPYFDAEQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVTLSYEALARVRDPVYGCVSHIFTLQQQVVNLQAELA 113 7***********************9989******************************************************************** PP DUF260 96 llkee 100 +++++ MDP0000429067 114 YVQAR 118 *9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.546 | 17 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-37 | 18 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MSESSSNGNN NNGGGGGPCG ACKFLRRKCI KGCIFAPYFD AEQGTAHFAA VHKVFGASNA 60 SKLLLRIPPH KRLDAVVTLS YEALARVRDP VYGCVSHIFT LQQQVVNLQA ELAYVQARLG 120 TLQRFPLPPQ SPQLEIPPPT RSLQYSSSNI NVTSSSSSDM VPTSNILMHC DPLQAPNTSS 180 EMSSLFNSED QELIIDGENL QALAREFVCR YLPGVRLNKS SGSHHQNF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-39 | 14 | 112 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-39 | 14 | 112 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008345767.1 | 1e-169 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 1e-69 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A498KKD9 | 1e-168 | A0A498KKD9_MALDO; Uncharacterized protein | ||||
STRING | XP_008345767.1 | 1e-169 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45410.1 | 3e-63 | LOB domain-containing protein 19 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000429067 |