PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000423329

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 424aa MW: 47013.6 Da PI: 9.404

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000423329	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	244	289	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq MDP0000423329 244 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 289 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.25	238	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-15	241	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.92E-12	242	291	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-13	243	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	244	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-11	244	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MDSXTHQHNS GLLRFRSAPH SLLSNFADGG DSGLHSKSPV XGSSESERLF SRFXNYSHIN 60 DSDSWPSSFQ EFDDKSVVTA TEAAVSAIRM SSQGGYSGLL PPHYPRQSSF NGGYGLAGSG 120 PMERHHTPAN KSVHSNSNLV RQSSSPAGLF SNTSLQNGFP FGTWNDSSNF PESLDGMRRD 180 QDHDGKXFSV DQNGELENRF HVLSHHLSLP KTSADIAMEK FXQLQDSVPC KVRAKRGCAT 240 HPRSIAERVR RTRISERMRK LQELVPNMDK QTNTADMLDL AVDYIKDLQK QFKVPNKLNR 300 EILHCGQSII KTHQNKEPIL LLPPTPLEQC LPTTASQHPQ RLLEINSPEV KKREIMASCN 360 EHPLVASTER SKPIGMGDPL VTEPIKANKV KVVVQTPSRS FTHFPKAPQQ SAVKKSVCRS 420 DLV*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MDSXTHQHNS GLLRFRSAPH SLLSNFADGG DSGLHSKSPV XGSSESERLF SRFXNYSHIN  60
DSDSWPSSFQ EFDDKSVVTA TEAAVSAIRM SSQGGYSGLL PPHYPRQSSF NGGYGLAGSG  120
PMERHHTPAN KSVHSNSNLV RQSSSPAGLF SNTSLQNGFP FGTWNDSSNF PESLDGMRRD  180
QDHDGKXFSV DQNGELENRF HVLSHHLSLP KTSADIAMEK FXQLQDSVPC KVRAKRGCAT  240
HPRSIAERVR RTRISERMRK LQELVPNMDK QTNTADMLDL AVDYIKDLQK QFKVPNKLNR  300
EILHCGQSII KTHQNKEPIL LLPPTPLEQC LPTTASQHPQ RLLEINSPEV KKREIMASCN  360
EHPLVASTER SKPIGMGDPL VTEPIKANKV KVVVQTPSRS FTHFPKAPQQ SAVKKSVCRS  420
DLV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.27172	1e-172	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008373739.2	0.0	transcription factor bHLH130-like
Swissprot	Q66GR3	4e-85	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A498IBM6	0.0	A0A498IBM6_MALDO; Uncharacterized protein
STRING	XP_008373739.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5177	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-77	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000423329

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]