PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000422537
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 367aa    MW: 41339.1 Da    PI: 9.9135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000422537genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.5e-16453148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd ll  +vkq+G++ W++++++mg  + R +k+c +rw +yl
    MDP0000422537  4 RQRWQPEEDALLRAYVKQYGPKEWSLVSQRMGkpLLRDPKSCLERWKNYL 53
                     89**********************************************97 PP
2Myb_DNA-binding24.47e-0870991647
                     HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +++G++ Wk+Ia++++ gRt+k +  +w  +
    MDP0000422537 70 XAKHGNK-WKKIAAELP-GRTPKRLGKWWEVF 99
                     579****.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.221157IPR017930Myb domain
SMARTSM007172.4E-13355IPR001005SANT/Myb domain
PfamPF002492.2E-13453IPR001005SANT/Myb domain
SuperFamilySSF466898.98E-19496IPR009057Homeodomain-like
CDDcd001671.85E-9653No hitNo description
Gene3DG3DSA:1.10.10.606.0E-20658IPR009057Homeodomain-like
SMARTSM007170.00158102IPR001005SANT/Myb domain
PROSITE profilePS5129412.94358104IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-1159103IPR009057Homeodomain-like
CDDcd001673.28E-463100No hitNo description
PfamPF002492.1E-57096IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MKERQRWQPE EDALLRAYVK QYGPKEWSLV SQRMGKPLLR DPKSCLERWK NYLKPGLKKG  60
SLTPEEQALX AKHGNKWKKI AAELPGRTPK RLGKWWEVFK EKQLKLQSQR QKNKHLLCST  120
SSSSTQLPPD MNIPVAGIGS PEKAVKGPYD HILETFAEKY VVQPKVYGAA FQSTTMMQEP  180
DPVLSLGSVG STATSVTAPS VMPQWMNINP SSTTSSTSST TPSPSVSLTL SPSDPVPDTD  240
PTRFYQMGTL IQLCKEVEEG MQSWMQQKKE ATWRLSRLEQ QLEAEKGRKR REAVEEIEAH  300
IRCLRQEEVA LVGRIERDYR EELSALQREA EGKEAKFVEA WCGKHAKLAK LVERIAVGVG  360
FSSKPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2k9n_A1e-12101077105MYB24
2kdz_A1e-12101077105MYB24
3zqc_A2e-12111119110MYB3
3zqc_D2e-12111119110MYB3
3zqc_G2e-12111119110MYB3
3zqc_J2e-12111119110MYB3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.159880.0bud| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744740.0DQ074474.1 Malus x domestica MYB92 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371007.10.0PREDICTED: protein rough sheath 2 homolog
TrEMBLQ2LMD80.0Q2LMD8_MALDO; MYB92
STRINGXP_008341864.10.0(Malus domestica)
STRINGXP_008353521.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25973369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.11e-84MYB family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Transient expression vectors for functional genomics, quantification of promoter activity and RNA silencing in plants.
    Plant Methods, 2005. 1: p. 13
    [PMID:16359558]