PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000408462

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 476aa MW: 53033 Da PI: 6.2219

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000408462	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.3	3.3e-15	323	403	1	80
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtk 80 +fYn+YA +GF + ++ +ks + + +++fvC k+gk++++ + + +++ ++ rt+Ckakl +++ + +k++v+ MDP0000408462 323 RFYNNYALAAGFGILEHSRRKSIDGECWLRKKFVCCKQGKKRDDGNPKPNKKGKKGDARTQCKAKLALNRGSgCEKFVVMV 403 5*******************9999999*************988999999************998777777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-12	323	404	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MDVLVGPTFS IDVSSYGPAQ TQDNRHRSGL YLNQNRGAAV VEEASSDSSS SIGVPDDSEE 60 EEDSKGDDGD EVQSKFNSGG GSGRGLGSLG SFGSLEESLP IKRGLSNYFS GKSKSFASLS 120 EVCSSVSSVK EVEKRDNPFN KRRRVLIASK WSRKSSSSSS LYNWPNPKSM PLLALAEEGD 180 EDXDEEQNRD RQGDGDNASQ QSSSDEEDQE RRRAPQKLLH RKLKSFKSKS CYCLSDLQEH 240 DEQXLKXCLD QIEVDMMGSS XTSEETQILK GEVEVEEIVV DREDVDVGDE LGAGMVEFGV 300 PRVDEELKPK LKMEFDSLDE GYRFYNNYAL AAGFGILEHS RRKSIDGECW LRKKFVCCKQ 360 GKKRDDGNPK PNKKGKKGDA RTQCKAKLAL NRGSGCEKFV VMVFVCTILD QSRNYRAPVN 420 VIPSRIQKSF PLTRRPITAR HVSTSEANHN TTRVNVITKL ETLFYKMRSF SHNIF*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MDVLVGPTFS IDVSSYGPAQ TQDNRHRSGL YLNQNRGAAV VEEASSDSSS SIGVPDDSEE  60
EEDSKGDDGD EVQSKFNSGG GSGRGLGSLG SFGSLEESLP IKRGLSNYFS GKSKSFASLS  120
EVCSSVSSVK EVEKRDNPFN KRRRVLIASK WSRKSSSSSS LYNWPNPKSM PLLALAEEGD  180
EDXDEEQNRD RQGDGDNASQ QSSSDEEDQE RRRAPQKLLH RKLKSFKSKS CYCLSDLQEH  240
DEQXLKXCLD QIEVDMMGSS XTSEETQILK GEVEVEEIVV DREDVDVGDE LGAGMVEFGV  300
PRVDEELKPK LKMEFDSLDE GYRFYNNYAL AAGFGILEHS RRKSIDGECW LRKKFVCCKQ  360
GKKRDDGNPK PNKKGKKGDA RTQCKAKLAL NRGSGCEKFV VMVFVCTILD QSRNYRAPVN  420
VIPSRIQKSF PLTRRPITAR HVSTSEANHN TTRVNVITKL ETLFYKMRSF SHNIF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	144	KRRRV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.23597	0.0	root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HE805489	2e-63	HE805489.1 Malus x robusta DNA fragment spanning resistance locus against Erwinia amylovora on linkage group 3, clone 16k15 contig1/4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008378154.2	1e-170	uncharacterized protein LOC103441231
TrEMBL	A0A498HM51	2e-97	A0A498HM51_MALDO; Uncharacterized protein
STRING	XP_008347648.1	1e-170	(Malus domestica)
STRING	XP_008378154.1	1e-170	(Malus domestica)

Link Out ? help Back to Top
Phytozome	MDP0000408462