PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000407613
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 259aa    MW: 29460.7 Da    PI: 5.4276
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000407613genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT++Ed +l+ +v+++G  +W+  ++  g+ R++k+c++rw +yl
    MDP0000407613 14 KGTWTPDEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding59.29.4e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +teE+e +v+++++lG++ W++Ia+ ++ gRt++++k++w++ 
    MDP0000407613  67 RGNYSTEEEETIVKLHEKLGNR-WSAIAAQLP-GRTDNEIKNHWHTN 111
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.188961IPR017930Myb domain
SuperFamilySSF466891.24E-2911108IPR009057Homeodomain-like
SMARTSM007174.7E-111363IPR001005SANT/Myb domain
PfamPF002498.2E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-221568IPR009057Homeodomain-like
CDDcd001674.80E-91661No hitNo description
PROSITE profilePS5129425.27262116IPR017930Myb domain
SMARTSM007177.5E-1766114IPR001005SANT/Myb domain
PfamPF002491.3E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2569115IPR009057Homeodomain-like
CDDcd001676.91E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVRTPCRDEN GMKKGTWTPD EDRKLIAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LRPNIKRGNY STEEEETIVK LHEKLGNRWS AIAAQLPGRT DNEIKNHWHT NLKKRTNNKQ  120
CNSSFSSSAT NTEETPSYSS LEAAVDQPIK KAIFPNAEST VTPQVTQKTD DRVDNSSQLS  180
PSPQPSSSEV SSMSADNNWV NYVEDINVTS MEAYADSQFI DDFWTEPFLA DNSYIPSGFY  240
TPLMDSEFVY PLFGGDFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121175109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.169630.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341938.10.0transcription factor MYB4-like
TrEMBLA0A498HG470.0A0A498HG47_MALDO; Uncharacterized protein
STRINGXP_008341938.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.18e-59myb domain protein 14