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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MDP0000406270 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family |
bHLH |
Protein Properties |
Length: 614aa MW: 67831.8 Da PI: 6.1337 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MDP0000406270 | genome | GDR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 40.5 | 5.1e-13 | 444 | 490 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq
MDP0000406270 444 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 490
799***********************66......******************9 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 614 aa
Download sequence Send
to blast |
MKNEMGLGGG VWDDEDKAMV AAVLGTRAFD YLISSAVSSN ENSCMGIGTD ENLHNKLSDL 60 VERPNASNFS WNYAIFWQIS RSKSGDWVLC WGDGSCREPK EGEESETRRI LGLSLEDGTQ 120 QRMRKIVLQK LHNLFGSSDE YNGALGLDRV TDMEMFLLAS MYFSFPRGEE GPGKCFASGE 180 HVWLLDLLKS GSEYCVRSFL AKSAGIQTIV LVPTDVGVVE LGSVRCIGER LELLQSIRSL 240 FSXQSSHMRA KPVAGVPMIG RRRDENVQLT NLSPVERGEV VPKIFGQDLN SGNLVRPRYR 300 EKLAVRKLEE RPWDVYSNGN RIAFSSPPNG IHGSSWPHIH DVKQGSPTEM YASQSPVNNL 360 QELVNGVRDD FRHNQYQPQK QVPIQIDFSG ATSRPSVAPR PIGVDSENSD AEAPCKEDQP 420 GTADERRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG 480 DAIAYINELQ AXLKVMEAER ENLGGTSRDA SALGASSGME IQNQAPDVDI QAVNDEVIVR 540 VSCPLDSHPA SRVIEAFKEA QITVVESKLA SADDTVLHTF VVKSQGSERL TKEKLIAAFS 600 RESNSLHSLS SVG*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 5e-29 | 438 | 503 | 2 | 65 | Transcription factor MYC2 |
5gnj_B | 5e-29 | 438 | 503 | 2 | 65 | Transcription factor MYC2 |
5gnj_E | 5e-29 | 438 | 503 | 2 | 65 | Transcription factor MYC2 |
5gnj_F | 5e-29 | 438 | 503 | 2 | 65 | Transcription factor MYC2 |
5gnj_G | 5e-29 | 438 | 503 | 2 | 65 | Transcription factor MYC2 |
5gnj_I | 5e-29 | 438 | 503 | 2 | 65 | Transcription factor MYC2 |
5gnj_M | 5e-29 | 438 | 503 | 2 | 65 | Transcription factor MYC2 |
5gnj_N | 5e-29 | 438 | 503 | 2 | 65 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 425 | 433 | RRPRKRGRK |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KR259848 | 0.0 | KR259848.1 Prunus avium cultivar Tieton bHLH transcription factor (bHLH13) mRNA, complete cds. |