PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000405748
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 637aa    MW: 72499.4 Da    PI: 5.2012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000405748genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-13381425655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++Er+RR+++N+++  Lr+l+P  +      Kl+ a+iL  A+eY+k+Lq
  MDP0000405748 381 LIAERKRRKKLNDRLYALRSLVPIiS------KLDRASILGDAIEYVKQLQ 425
                    579*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.24E-10373421No hitNo description
PROSITE profilePS5088816.348375424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-17378437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10381425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-16381430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-16382438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MDFQELPQSP PCLVQTLSDD CSGMDRASVI GDTIAYVSKL QRQVKELQKE LECNSNGGGK  60
ETSYICGNNG NLQSEFLRQI ETIIANTPEN EKMEPQVEVT ELDVNEFSVT VLCEHKPGGF  120
VRLMEALDTL GLEVTYANAT SFKTLIFNVF KVQIITVDKN RTSEWTTKLL QETLDPYCIH  180
XSISKSLILX FRKRAVATKV FEDQHVIDFV TAQYNLSLEE EALTSITGTR KMSEVGSKRF  240
LDHLSFRTSL ENLNLHPYDV SMERTSNSPM NFSQQFTNYN SGNLTKNNID ISSAENGFQE  300
MEAMQMSITS ERQRHMDMQQ YMEALVPNID QQEGNEKRDS NTHEAEGQAG DFMSDCSDQI  360
DEEADTKYQR RTGKRPQAKN LIAERKRRKK LNDRLYALRS LVPIISKLDR ASILGDAIEY  420
VKQLQKQAKQ LQDELDDHAE DDAAKNNVKS EIQSRSGVDH IRPKTDDHQD DHKASNGIHF  480
GTPGDCSVFK QSRDYSYDVH DHKTEQMEPQ VEVAQLDGNQ FFVKVFCEQK PGGFERLMEA  540
LSSLCLEVTN ANVTTFRCLV SNVFIVEKKD TDMVEADDVR DSLLELIRNP LRPRNETAKT  600
EENGVGLDNH HDHHHHQHLH NHHFSPLHLH HLPNEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383390ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959482.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A498JWU90.0A0A498JWU9_MALDO; Uncharacterized protein
STRINGXP_008377800.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-63bHLH family protein