PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000404198
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CPP
Protein Properties Length: 526aa    MW: 56142.2 Da    PI: 8.4856
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000404198genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.12.6e-16147186140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  MDP0000404198 147 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 186
                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163422.21890187IPR005172CRC domain
SMARTSM011148.4E-20147188IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.8E-13150185IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MNDVPAKKLA RQLDFTVFGS APTSVAVPEL SKPPLPTVAV PPSLPKPPVV SVPVPVSVPQ  60
QPHTLKPGKP ESPKSRPRPN VDAKDGTPKK QKQCNCKHSR CLKLARNDAI EATLERNPNA  120
FRPKIASSPH GARDTREEAG EVLILGKHNK GCHCKKSGCL KKYCECFQAN ILCSENCKCM  180
DCKNFEGSEE RQALFHGDHG NNMAYLQQAA NAAITGAIGS SGYASSPPVS KKRKGQELFG  240
PTAKDPSLHR IGQFQQGNNI RAPAPSPLSS VPVNHLGGTT GLGPSKFTYR SLLADIIQPQ  300
DLKELCSVLV VVAEEAAKTL ADQRNTAEKP TETSLASTTQ DRLQSEKESD AQNAVADDRS  360
SLNEADKISP EDSNSDGADV MKGRPMSPGT LALMCDEQDT MFMSAASNGL MGDGNTSSRL  420
PNGQGMTEVY AEQERIVLTK FRDCLNRLIT FARSEAETQK DQHSNGSTNT RIDSQTPQRP  480
ITNGVTKPAV PLAANTTTSQ TVTAAVSALS KAPSHPENGD GRPKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-25851965132Protein lin-54 homolog
5fd3_B2e-25851965132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.303425e-40bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4840283e-87AM484028.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X101832.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386297.20.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-169TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A498KCF50.0A0A498KCF5_MALDO; Uncharacterized protein
STRINGXP_008354397.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-165Tesmin/TSO1-like CXC domain-containing protein