PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000403071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB_related | ||||||||
Protein Properties | Length: 47aa MW: 5064.74 Da PI: 7.2542 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.7 | 4.8e-12 | 14 | 44 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 +g+WT+eEd +lv +++++G+g+W++++ MDP0000403071 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNT 44 79*************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-14 | 5 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.51E-10 | 8 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.897 | 9 | 46 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.1E-10 | 14 | 44 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.75E-7 | 16 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 47 aa Download sequence Send to blast |
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.15735 | 3e-72 | bud| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During seed development, gradually down-regulated towards the onset of ripening (veraison). During berry skin development, dramatic decrease to full repression at veraison, followed by a slight increase towards ripening. In flowers, barely detectable in stamens, at the interface of filaments and anthers. {ECO:0000269|PubMed:22018045}. | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to stomatal guard cells. Mostly expressed in leaves, cotyledons, hypocotyls, seeds and ripened berry skins. {ECO:0000269|PubMed:22018045}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM001670 | 1e-59 | KM001670.1 Pyrus x bretschneideri transcription factor MYB31 (MYB31) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017621802.1 | 4e-28 | PREDICTED: myb-related protein 306-like isoform X1 | ||||
Swissprot | B3VTV7 | 6e-27 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A0D2T347 | 5e-26 | A0A0D2T347_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A224MLP3 | 6e-26 | A0A224MLP3_FRAAN; Transcription factor MYB30 | ||||
TrEMBL | D7KK40 | 2e-26 | D7KK40_ARALL; Uncharacterized protein | ||||
STRING | XP_004137409.1 | 5e-27 | (Cucumis sativus) | ||||
STRING | fgenesh1_pg.C_scaffold_1003053 | 3e-27 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 2e-29 | myb domain protein 60 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000403071 |
Publications ? help Back to Top | |||
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