PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000397753 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 234aa MW: 26484.4 Da PI: 7.1396 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.5 | 7.4e-07 | 74 | 127 | 38 | 90 |
FAR1 38 egkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 egk++ + + + +++ r +rt+Ckakl+v+k + ++vt +++e nH+++ MDP0000397753 74 EGKKRVDPNPKPNKKGMRGDDRTECKAKLVVNKGIgCEIFVVTVFNEEFNHPMS 127 5666655555667888999**************99899*************997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MASESIEKRV EGWVPGFRDP RDHIRVVIAE KERQREGGGE GCQSELDLMW VEVVLMLELT 60 MVVHPEAMKN RDCEGKKRVD PNPKPNKKGM RGDDRTECKA KLVVNKGIGC EIFVVTVFNE 120 EFNHPMSSAS YLFRSHCRVS KVKNAMIEQC AQDNISVSKQ VGLLEVPSEG IGNIGCTPKD 180 MYNAKQQLRG HLIGHNAEML KKHFEDEKKI NNSFYIKMEI DEGGTLEFLL SRY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000397753 |