PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000393956 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | B3 | ||||||||
Protein Properties | Length: 174aa MW: 20338.2 Da PI: 8.2355 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.2 | 2.2e-11 | 59 | 164 | 3 | 94 |
EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHH.HHHHHHT--TT-EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg...rsWevkliyrkksgryvltkGWk.eFvkangLkegDfvvFk 83 k l sd ++++rl +pk+ +++h + +++e+ t+t+ d + + ++k+ +++++ yvl +GW+ eF gLke+D + ++ MDP0000393956 59 KRLAASDLGELSRLLMPKEAVQKHvmsylddklakMVDSKEGLTVTVVDWDTcnrHELTFKH--WNSGDFYVLNGGWRpEFMVRRGLKENDEIGLY 152 77889*******************99998888887333446678888886657556666666..*************878**************** PP E-SS.SEE..EE CS B3 84 ldgr.sefelvv 94 ld++ ++ ++ + MDP0000393956 153 LDWDwKTSKCIF 164 **9988776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-16 | 54 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.05E-11 | 55 | 170 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-12 | 58 | 165 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-8 | 59 | 165 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MRTPLLRGQE EDHHPSKVRL FGVGLDNSLN DPRGGHEPST DLYLWDPTWD YNSIWKIRKR 60 LAASDLGELS RLLMPKEAVQ KHVMSYLDDK LAKMVDSKEG LTVTVVDWDT CNRHELTFKH 120 WNSGDFYVLN GGWRPEFMVR RGLKENDEIG LYLDWDWKTS KCIFRFSVLR RAK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008371198.1 | 1e-109 | putative B3 domain-containing protein At1g78640 | ||||
TrEMBL | A0A498K0T1 | 1e-108 | A0A498K0T1_MALDO; Uncharacterized protein | ||||
STRING | XP_008371198.1 | 1e-109 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF579 | 12 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 5e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000393956 |