PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000391743

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 187aa MW: 20684 Da PI: 7.5101

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000391743	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00028	35	52	38	55
STCHHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksLq 55 +Ka++L A++Y+k+Lq MDP0000391743 35 TDKASVLGDAIKYVKHLQ 52 68***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.16E-6	26	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-5	34	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MLKIMFLRRE SAEKISASVA SIRDSKLPIF TKLQTDKASV LGDAIKYVKH LQELTKMLEK 60 QAAKKTVEAV VFVKRTQYSA DDDISSSDEN SESCSNQPLP EIEARVSDKE VLIRIHSEKT 120 KGSLASILSE IEKLDLTIVH SCALPLGNST LDITVVAQMD VEFRMTVKDL VKNLRQALLK 180 LVGPEI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017189950.2	1e-103	transcription factor bHLH18-like
Refseq	XP_017189951.2	1e-103	transcription factor bHLH18-like
TrEMBL	A0A498HVP7	1e-102	A0A498HVP7_MALDO; Uncharacterized protein
STRING	XP_008380062.1	1e-102	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF455	34	164

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22770.1	1e-31	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000391743