PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MDP0000387952

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 448aa MW: 51697.6 Da PI: 6.5519

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000387952	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.1	1.7e-26	122	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+q+v++Li+a+++++e+ ++++ +kk++W++vsk+m+er +++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d MDP0000387952 122 KWTDQMVKLLITAVSYIGEDTSSDCggggrrkysvlQKKGKWKSVSKVMAERSYRVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDV 217 7********************9888999999999********************************************56999988888776 PP trihelix 85 l 85 + MDP0000387952 218 I 218 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.6E-23	120	245	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEEHLSQGXG GGMVXXGASY GGLDLQGSMR GHQQPQHPHT IHHHHPQPRQ GSLVHSPIPE 60 GFPLKMGTMH HCDQTISMVD YSKGERCKNS ASDEDEPSYA EEGDGHAEXS RGKKGSPWQR 120 VKWTDQMVKL LITAVSYIGE DTSSDCGGGG RRKYSVLQKK GKWKSVSKVM AERSYRVSPQ 180 QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPALLDVIDY LTEKEKDDVR KILSSKHLFY 240 EEMCSYHNGN RLHLPHDPAL QKSLHRALKR DDLDNDDLRR HHQDDLDEDD QDMENEEHDD 300 FEENNALRGD NRGIYISEDS VKRLRQGQGR EDFNFGSSLN SQDCNKSSYF HPQIPQPDMN 360 QVLPDGTKAA WLQKQWVESR SFQLEEQKLQ IQVEMLELEK QRLKWQRFSK KRDRELEKMR 420 MENDRMKLEN ERMALELKQK EMGAGFS*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEEHLSQGXG GGMVXXGASY GGLDLQGSMR GHQQPQHPHT IHHHHPQPRQ GSLVHSPIPE  60
GFPLKMGTMH HCDQTISMVD YSKGERCKNS ASDEDEPSYA EEGDGHAEXS RGKKGSPWQR  120
VKWTDQMVKL LITAVSYIGE DTSSDCGGGG RRKYSVLQKK GKWKSVSKVM AERSYRVSPQ  180
QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPALLDVIDY LTEKEKDDVR KILSSKHLFY  240
EEMCSYHNGN RLHLPHDPAL QKSLHRALKR DDLDNDDLRR HHQDDLDEDD QDMENEEHDD  300
FEENNALRGD NRGIYISEDS VKRLRQGQGR EDFNFGSSLN SQDCNKSSYF HPQIPQPDMN  360
QVLPDGTKAA WLQKQWVESR SFQLEEQKLQ IQVEMLELEK QRLKWQRFSK KRDRELEKMR  420
MENDRMKLEN ERMALELKQK EMGAGFS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008381817.2	0.0	uncharacterized protein LOC103444641
TrEMBL	A0A498IQM2	0.0	A0A498IQM2_MALDO; Uncharacterized protein
STRING	XP_008348746.1	0.0	(Malus domestica)
STRING	XP_008381817.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-153	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	MDP0000387952