 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MDP0000362244 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
| Family |
C2H2 |
| Protein Properties |
Length: 287aa MW: 31138.4 Da PI: 4.4511 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000362244 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.7 | 0.00019 | 260 | 283 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
++C+ C+ksF++ L +H + H
MDP0000362244 260 HSCKTCSKSFNSDGALSSHNKAkH 283
79*****************88766 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MEFWGVEVKA GEPLKVVPEE SYVIHLSQAT LGELKKGGDQ CVIHVKVGDQ KLVLANLSSD 60
KMPQIPFDLV FDKEFELSHN LKSGSVHFCG YQTYIANESD EDQXDFDSES EEDLPLNFTG 120
NGNIVEAKPA PPKTNTVKPE SSGKQKVKIE EPIKDEDDSD DSDEDDSDDD ESSDEDMLGA 180
DSSDEDEEDS EEEEDTPTPK KDSKKRPNES APKTPVSAKK AKQVTPQKTD GKKGAHTATP 240
HPAKKGGKTP QTPNSAGGDH SCKTCSKSFN SDGALSSHNK AKHGAKX
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Mdo.2351 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during fertilization, while it is repressed during seed development. {ECO:0000269|PubMed:15082924}. |
| Uniprot | TISSUE SPECIFICITY: Predominantly expressed in ovaries. Accumulates predominantly in the micropylar region of the ovule's integument. {ECO:0000269|PubMed:15082924}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
