PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000324259
Common NameLOC103443209, MADS14
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28113.5 Da    PI: 10.0061
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000324259genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.62.6e-312473150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  MDP0000324259 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 73
                   79***********************************************8 PP
2K-box111.68.4e-37921884100
          K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                    ++g s++ea+++ +qqe++kL+++i+++q+++Rh+lGe+L++L++keL++Le +Lek++++iRskKne+l+++ie +qk+e elq++n+ Lr+k++
  MDP0000324259  92 TDGGSVSEANTQFYQQEASKLRRQIREIQNSNRHILGESLSTLKVKELKNLEGRLEKGISRIRSKKNEILFSEIEFMQKRETELQHHNNFLRAKIA 187
                    566779****************************************************************************************98 PP

          K-box 100 e 100
                    e
  MDP0000324259 188 E 188
                    6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.5011676IPR002100Transcription factor, MADS-box
CDDcd002651.04E-431791No hitNo description
SuperFamilySSF554559.42E-331788IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003192.0E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-335374IPR002100Transcription factor, MADS-box
PfamPF014861.0E-26100186IPR002487Transcription factor, K-box
PROSITE profilePS5129714.666102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEFANQAPES STQKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSTRGRLY EYANNSVRAT IDRYKKACAD STDGGSVSEA NTQFYQQEAS KLRRQIREIQ  120
NSNRHILGES LSTLKVKELK NLEGRLEKGI SRIRSKKNEI LFSEIEFMQK RETELQHHNN  180
FLRAKIAESE REQQQQQTHM MPGTSYDPSM PSNSYDRNFF PVILESNNNH YPRQGQTALQ  240
LVX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-201684169Myocyte-specific enhancer factor 2B
1tqe_Q6e-201684169Myocyte-specific enhancer factor 2B
1tqe_R6e-201684169Myocyte-specific enhancer factor 2B
1tqe_S6e-201684169Myocyte-specific enhancer factor 2B
5f28_A6e-201684169MEF2C
5f28_B6e-201684169MEF2C
5f28_C6e-201684169MEF2C
5f28_D6e-201684169MEF2C
6byy_A7e-201684169MEF2 CHIMERA
6byy_B7e-201684169MEF2 CHIMERA
6byy_C7e-201684169MEF2 CHIMERA
6byy_D7e-201684169MEF2 CHIMERA
6bz1_A8e-201684169MEF2 CHIMERA
6bz1_B8e-201684169MEF2 CHIMERA
6c9l_A6e-201684169Myocyte-specific enhancer factor 2B
6c9l_B6e-201684169Myocyte-specific enhancer factor 2B
6c9l_C6e-201684169Myocyte-specific enhancer factor 2B
6c9l_D6e-201684169Myocyte-specific enhancer factor 2B
6c9l_E6e-201684169Myocyte-specific enhancer factor 2B
6c9l_F6e-201684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29940.0bud| cell culture| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|PubMed:11414613}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00093SELEXTransfer from AT3G58780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2511170.0AJ251117.1 Malus domestica mRNA for C-type MADS box protein (mads14 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280758.10.0agamous-like MADS-box protein AGL1
RefseqXP_008380232.10.0agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_008380233.10.0agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_008380234.10.0agamous-like MADS-box protein AGL1 isoform X1
RefseqXP_008380235.10.0agamous-like MADS-box protein AGL1 isoform X1
SwissprotQ93XH41e-122MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLD9ZJ341e-179D9ZJ34_MALDO; MADS domain class transcription factor
STRINGXP_008380232.11e-180(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-119MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. van der Linden CG,Vosman B,Smulders MJ
    Cloning and characterization of four apple MADS box genes isolated from vegetative tissue.
    J. Exp. Bot., 2002. 53(371): p. 1025-36
    [PMID:11971914]
  3. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  4. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  5. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]