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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000322479 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 379aa MW: 42328.7 Da PI: 6.1778 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.1e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++++G+g +W t ++++g++R++k+c++rw++yl MDP0000322479 14 KGPWSPEEDATLKAYIEKHGTGgNWITLPQKIGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.8 | 4.5e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ MDP0000322479 69 GGFSEEEDNIICSLYMSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.385 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.38E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.05E-9 | 16 | 62 | No hit | No description |
SMART | SM00717 | 3.1E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.421 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.6E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.41E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE KHGTGGNWIT LPQKIGLRRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYMSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKQQEAQQS RRAAIFKQEM IKRSENNANF VNISAGFFNQ NPYNWPELPV VPVANYQTHD 180 PQLMQDEASI KTMLINLGGR FSHDSDTSTT SFQYPVDISS TSSSDHQFYQ SSIDVLASTS 240 AANSNNYSQF PSTNFDASNG TGGSSSPTIF HGLDDQNNNL QADHLNQLTE LEVYDNSFAH 300 QHQQLGGFYY QASEETLNNG SSAGTSTASA ESEISWGDIN SLVYSTQMVA DYETCCQQAV 360 VVPQDQHSFF AEATYFGLK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00089 | SELEX | Transfer from AT3G49690 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028951023.1 | 0.0 | transcription factor RAX3-like | ||||
TrEMBL | A0A498I346 | 0.0 | A0A498I346_MALDO; Uncharacterized protein | ||||
STRING | XP_009342185.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 1e-75 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000322479 |