PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000322264
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 269aa    MW: 29769 Da    PI: 10.1382
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000322264genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.82.4e-121161521551
                    HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    + ++ ++KK + LSvLCda + ++ifsstgk++ y++
  MDP0000322264 116 NQKAXLIKKTHXLSVLCDAXIXLVIFSSTGKMFRYCN 152
                    56899*****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5092013.181294IPR018108Mitochondrial substrate/solute carrier
Gene3DG3DSA:1.50.40.103.3E-12476IPR023395Mitochondrial carrier domain
SuperFamilySSF1035064.58E-10574IPR023395Mitochondrial carrier domain
PfamPF001533.8E-12778IPR018108Mitochondrial substrate/solute carrier
SMARTSM004320.0045115153IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-9116131IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.302117154IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-10117154IPR002100Transcription factor, MADS-box
PfamPF003196.3E-9118150IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-9131152IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.50.9701.3E-11169214IPR029061Thiamin diphosphate-binding fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSDALINGLA GAGGGIIAQL ITYPLHTVNA RQQTDRDRKK EKKKLGTVEQ ICQVIKNEGW  60
ERLYEALTSS LVGMAAAQLQ GPTQLLILHL WKRXVLSEKP RGVCSEXXGV GGGHENQKAX  120
LIKKTHXLSV LCDAXIXLVI FSSTGKMFRY CNATNAIHAT VAGPTSHLQL IAEPGLNLLG  180
CCNELNAGYA AKGYGRARRI GENVVAFTVG RLKCAERDRR CVQRELAGHL HNRWDELQRL  240
RHEXNPSPHD RVXRFHSRAS VLPNRHLSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13644DRKKEKKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.30511e-109bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-09MIKC_MADS family protein