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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
MDP0000321569 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family |
RAV |
| Protein Properties |
Length: 508aa MW: 57321.1 Da PI: 10.1845 |
| Description |
RAV family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000321569 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 36.3 | 1.4e-11 | 31 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV ++grW A+I+d + r++lg+f +eeAak + a +k++g
MDP0000321569 31 SRYKGVV-PQSNGRWGAQIYDK-----SHRVWLGTFNDEEEAAKTYNIALLKFRG 79
78****7.7779*********4.....6***********************9997 PP
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| 2 | B3 | 91.4 | 6.7e-29 | 165 | 267 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f+kv tpsdv++++r+v+pk++ae+h g +++ l++ede g++W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v+F+++ ++
MDP0000321569 165 FEKVATPSDVGRLNRMVIPKQHAEKHfqvhlsvG--FGKGVLLKFEDELGKVWRFGYCYWSSSQSYVLSKGWIRFVKEKKLKAGDIVMFQRSVGED 258
89************************88887652..237899************************************************886688 PP
E..EEEEE- CS
B3 90 felvvkvfr 98
++l++ +
MDP0000321569 259 KKLFIECRP 267
888887765 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 508 aa
Download sequence Send
to blast |
MDTMSCWNAS TSDYSTMNGA NGARSNKLPS SRYKGVVPQS NGRWGAQIYD KSHRVWLGTF 60
NDEEEAAKTY NIALLKFRGL DAITHLSRSQ MKPYGRDVTE ALFLESHSKA EIIDMLRKHS 120
YANELEMYKH KLHNGXALGL DDGGKRTKCY LXLMDTCSRE RELLFEKVAT PSDVGRLNRM 180
VIPKQHAEKH FQVHLSVGFG KGVLLKFEDE LGKVWRFGYC YWSSSQSYVL SKGWIRFVKE 240
KKLKAGDIVM FQRSVGEDKK LFIECRPRKV DVSRIEEMHG RVAGPLATVQ DDGVICGVVL 300
RLTHKRMVKP RLQTAPWVTC VVHSVTGKSP FSLVYTXVPK HVVGLIKLPT GPSGXVAAEK 360
MAKSIQAIKA KVCERLAQTY AKYKAVVDQH RGSHVFQVGD AVMVFFRKER FPVETYSKVK 420
PRKYGPYKIL QKINDNAYVV DXPSSMSISP TFNVANLFDH TASKATQKNR ERETAMASLA 480
QQFIGLRVKM LTALHLEALE ALNPAEAK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Choi D, et al.
iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
Mol Plant, 2014. 7(5): p. 792-813
[PMID:24380880] - Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
TEMPRANILLO is a regulator of juvenility in plants.
Sci Rep, 2014. 4: p. 3704
[PMID:24424565] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond.
Ann. Bot., 2014. 114(7): p. 1459-70
[PMID:24812253] - Marín-González E, et al.
SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
Plant Physiol., 2015. 169(2): p. 1214-24
[PMID:26243615] - Matías-Hernández L, et al.
TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
Plant Physiol., 2016. 170(3): p. 1624-39
[PMID:26802039]
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