PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000321302
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 113aa    MW: 13304.7 Da    PI: 11.182
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000321302genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.27.5e-332275255
        G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                   prlrWtpeLH++F++a+e+LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR+
  MDP0000321302 22 PRLRWTPELHRCFLQAIERLGGHRKATPKLVLQFMDVKGLTISHVKSHLQMYRS 75
                   8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.6121878IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-311876IPR009057Homeodomain-like
SuperFamilySSF466894.48E-172075IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-252276IPR006447Myb domain, plants
PfamPF002491.0E-92374IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MTTSSCSARN GAVRQYVRSK VPRLRWTPEL HRCFLQAIER LGGHRKATPK LVLQFMDVKG  60
LTISHVKSHL QMYRSMKGYP IRRQGKYPSI YFCRFIQSFR LFAYPYFLSA DLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-202377357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-202377357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-202377357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-202377357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302191e-142bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280888.13e-56putative Myb family transcription factor At1g14600
SwissprotQ700D98e-30MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLD9ZJ756e-55D9ZJ75_MALDO; MYBR domain class transcription factor
STRINGXP_008389125.11e-55(Malus domestica)
STRINGXP_008389131.11e-55(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55393353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-33G2-like family protein