PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000320739

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 1397aa MW: 152014 Da PI: 6.8562

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000320739	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.6	6.2e-15	944	989	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ E+rRR+riN+++ L l+P++ K +Ka++L +A+eY+k+Lq MDP0000320739 944 HNMSEKRRRSRINEKMKALLNLIPNS-----NKTDKASMLDEAIEYLKQLQ 989 ***********************7.....5****************9 PP
2	HLH	34.4	4e-11	1196	1242	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h Er RR+++++ f+ L llP++ K +K++i+ + ++YIksL+ MDP0000320739 1196 HTWTERERRKKMRNMFSSLHALLPHL----PAKADKSTIVDESIRYIKSLE 1242 6668*******************6....39***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.86E-16	935	993	No hit	No description
SuperFamily	SSF47459	8.11E-19	936	999	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-18	936	999	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.13	939	988	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-12	944	989	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-17	945	994	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.706	1191	1241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-13	1195	1251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-8	1196	1242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-12	1196	1251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.10E-11	1196	1246	No hit	No description
SMART	SM00353	3.2E-8	1199	1247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1397 aa Download sequence Send to blast
MQGQRGTIGS LPEFLDFDHG SASNDAALDQ QICWNSTRNP RNPAERIPDY VQSPGDMNVG 60 FVNSMGQERQ HLSRWCLGEP SSSNSQSEAS TDERKPDLGW SSSVDPCVEA ASRIEERHYE 120 STNNLSLDNN VNTFFTQSSS SDAIPQNLNL NAGFAGHGGD NSQVMECPNT FKYNVSENEQ 180 IRPPSSSNSF MLPSGSAGFL MGENDGRSGS SLEGRRVSCK RKAMEGNIGQ SSLSGSCSYF 240 QHTDSGGRTX VPAHYNAVSS LSISTPSEPG NSRLGVVGGA LTSDSLPDSN VGRSSESTHR 300 NFRVRINPSN QQNSIHSNRF LTGRAARHSS ISSSNHSPSL LPVDHNMDLR PAPALDNMSS 360 QNQPVVIHVP ALPQNVQSLR WSGGSSSRTG SLSNSVVYGD RDAPQPPPRE EGSSRSMARH 420 ILDHPIFVPA TELRNSARHP AGASNRNLPG GNASIPGNVA SASRTGTSSG VNPAAAPTWV 480 PPHNSHPQFP RRLSEYVRRS LFSXSGSEPG SQGTNYLPLH SGPASSPEVE SSSGTGNQSH 540 HRSHPRSASW MERHGDGGLG LPYSLRTLAA AGGEGSSRLV SEICNVLGLM RRGESLRFED 600 VMILDQSVLF GVADIHDRHR DMRLDVDNMS YEELLALEER IGNVNTGLSE ETISKRLKHK 660 KYIAVGSSAD TEPCCVCQYP STCIMTYGVC VHIPGTLKKI SQSFMEIGNH GGTAQXKKRE 720 KDIGERERAE QRGRIGNDXN NKQKPHRLRL SSGSSVKLFD FFSGSEGLRI SAMADLYGSA 780 PDSEEISNII SELLHGHGSS ASSASSSMPF KPTYMHLLHS SVPLPLQAAT QSEFLIPEAR 840 HEDHGRFAQL VDRSGXDQRV VGGNSNSAGV LESSSGFYFS DSGGYFTAEV KEGMGPDGRR 900 ISSENDLGDF SCDSEKGLEE APDVQLNSAP PRXSSKRSRA ADVHNMSEKR RRSRINEKMK 960 ALLNLIPNSN KTDKASMLDE AIEYLKQLQL QVQMLTMRNG LSLHPMCLPG AMQPMQLPHM 1020 GLSFEEGSNK FPKSSKGINP FYGSGENSMQ SAFNLSAGYM ISNPPMVXPS VANVPTSEPT 1080 FGFEPSVQAH YRLFSVPSSS KINHTYISSI HFRQYQMAEA DACMDLGGLX TARKSEEALV 1140 RTSEDNPTXW LENVSSSCPT PTNPVEKKEV VEIXESSDKA GGPGGRAGGE SDHGVHTWTE 1200 RERRKKMRNM FSSLHALLPH LPAKADKSTI VDESIRYIKS LEHILQTTQT QRLDKFSALP 1260 ASYRELTCDT REAFLADHFH QGAQTSINLA LPAALSPPPA SFQTWFSPNV VMNMSGNDAQ 1320 ISVCSPPKLG MSTTLFYILE KHKLDVVSVH ISSDRCRCMY MIHAQVGGAC DNFPEALSVE 1380 DTFKLAASEM NLWLLSR

Sequence ? help Back to Top

Protein Sequence Length: 1397 aa Download sequence Send to blast

MQGQRGTIGS LPEFLDFDHG SASNDAALDQ QICWNSTRNP RNPAERIPDY VQSPGDMNVG  60
FVNSMGQERQ HLSRWCLGEP SSSNSQSEAS TDERKPDLGW SSSVDPCVEA ASRIEERHYE  120
STNNLSLDNN VNTFFTQSSS SDAIPQNLNL NAGFAGHGGD NSQVMECPNT FKYNVSENEQ  180
IRPPSSSNSF MLPSGSAGFL MGENDGRSGS SLEGRRVSCK RKAMEGNIGQ SSLSGSCSYF  240
QHTDSGGRTX VPAHYNAVSS LSISTPSEPG NSRLGVVGGA LTSDSLPDSN VGRSSESTHR  300
NFRVRINPSN QQNSIHSNRF LTGRAARHSS ISSSNHSPSL LPVDHNMDLR PAPALDNMSS  360
QNQPVVIHVP ALPQNVQSLR WSGGSSSRTG SLSNSVVYGD RDAPQPPPRE EGSSRSMARH  420
ILDHPIFVPA TELRNSARHP AGASNRNLPG GNASIPGNVA SASRTGTSSG VNPAAAPTWV  480
PPHNSHPQFP RRLSEYVRRS LFSXSGSEPG SQGTNYLPLH SGPASSPEVE SSSGTGNQSH  540
HRSHPRSASW MERHGDGGLG LPYSLRTLAA AGGEGSSRLV SEICNVLGLM RRGESLRFED  600
VMILDQSVLF GVADIHDRHR DMRLDVDNMS YEELLALEER IGNVNTGLSE ETISKRLKHK  660
KYIAVGSSAD TEPCCVCQYP STCIMTYGVC VHIPGTLKKI SQSFMEIGNH GGTAQXKKRE  720
KDIGERERAE QRGRIGNDXN NKQKPHRLRL SSGSSVKLFD FFSGSEGLRI SAMADLYGSA  780
PDSEEISNII SELLHGHGSS ASSASSSMPF KPTYMHLLHS SVPLPLQAAT QSEFLIPEAR  840
HEDHGRFAQL VDRSGXDQRV VGGNSNSAGV LESSSGFYFS DSGGYFTAEV KEGMGPDGRR  900
ISSENDLGDF SCDSEKGLEE APDVQLNSAP PRXSSKRSRA ADVHNMSEKR RRSRINEKMK  960
ALLNLIPNSN KTDKASMLDE AIEYLKQLQL QVQMLTMRNG LSLHPMCLPG AMQPMQLPHM  1020
GLSFEEGSNK FPKSSKGINP FYGSGENSMQ SAFNLSAGYM ISNPPMVXPS VANVPTSEPT  1080
FGFEPSVQAH YRLFSVPSSS KINHTYISSI HFRQYQMAEA DACMDLGGLX TARKSEEALV  1140
RTSEDNPTXW LENVSSSCPT PTNPVEKKEV VEIXESSDKA GGPGGRAGGE SDHGVHTWTE  1200
RERRKKMRNM FSSLHALLPH LPAKADKSTI VDESIRYIKS LEHILQTTQT QRLDKFSALP  1260
ASYRELTCDT REAFLADHFH QGAQTSINLA LPAALSPPPA SFQTWFSPNV VMNMSGNDAQ  1320
ISVCSPPKLG MSTTLFYILE KHKLDVVSVH ISSDRCRCMY MIHAQVGGAC DNFPEALSVE  1380
DTFKLAASEM NLWLLSR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.7161	1e-127	bud\| flower\| fruit\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A498JAA8	0.0	A0A498JAA8_MALDO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	8e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000320739