PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000320381
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARR-B
Protein Properties Length: 637aa    MW: 71271.9 Da    PI: 5.9908
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000320381genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.95.2e-24199252155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  MDP0000320381 199 KARVVWSVDLHQKFVKAVHQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 252
                    68*******************.9*******************************8 PP
2Response_reg79.61.1e-26191271109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+vdD+p+ + +l+++l+k  y ev+++  ++eal ll+ek+  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga
  MDP0000320381  19 VLVVDDDPTWLXILEKMLKKCSY-EVTTCGLATEALCLLREKKngYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGA 112
                    89*********************.***************999999**********************6644.8*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     d+l Kp+ ++el++
  MDP0000320381 113 CDYLLKPIRMKELRN 127
                    ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.7E-1471596IPR017053Response regulator B-type, plant
SuperFamilySSF521728.68E-3516142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.5E-4316144No hitNo description
SMARTSM004481.8E-3117129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.76118133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2319128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.95E-2820133No hitNo description
SuperFamilySSF466891.74E-16197255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-27197256IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-21199252IPR006447Myb domain, plants
PfamPF002496.9E-8201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MESSFSSPRN DSFPAGLRVL VVDDDPTWLX ILEKMLKKCS YEVTTCGLAT EALCLLREKK  60
NGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRRKIHEI KDIESHESLE GIQLIRSGSD QYDEGYFLSX DDLTSSRKRK  180
DVDNKYDDKD FADCSSTKKA RVVWSVDLHQ KFVKAVHQIG FDKVGPKKIL DLMNVPWLTR  240
ENVASHLQKY RLYLGRLQKE NDLXSSFGGX KRSXSPSKDA QGSFGLQNSI SIQQNDLAHG  300
SFXVSGNNLI AQCVDPKSHE GDAKGIVSEP VAEIKKGSNX NIPDSQKTRS LQIVDFNNSC  360
VEPKNGVIGN VPDSQKIRIS PLDFNNSYAE TKKGLNGNIP DSQKIXTPQV RPSHSFTSVE  420
SEVNFTEFES TIRTKYSWNE IQLKKEQKPL IQLNSGFNKP PLSGPHNHFQ VDRLQSIPSI  480
SPRPSIVEGD VTGPAKSKPS YSEYINNQGS QVSPTISTAD SFPDQIKSCV VNHQVSETIS  540
SSTSNMKNQG FNLSSXTDLE SAQRSLIVGS ASPFASLDDD FQICWFQGDC YGMNLGLQNI  600
EFPEYNDPAL ISEVPAHLYD ALRFDYPCDV THQNILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17195257163ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.161690.0bud| fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008353033.20.0two-component response regulator ARR11-like isoform X1
TrEMBLA0A498HPI30.0A0A498HPI3_MALDO; Two-component response regulator
STRINGXP_008353033.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-124response regulator 11