PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000319248
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 581aa    MW: 64773.6 Da    PI: 10.601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000319248genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14440486455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRd iN+++  L++l+P+a      K +Ka++L ++++Y+++Lq
  MDP0000319248 440 VHNQSERKRRDLINQKIKALQRLVPNA-----SKTDKASMLDEVIKYLQQLQ 486
                    6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037632.4E-21112201IPR005516Remorin, C-terminal
Gene3DG3DSA:4.10.280.104.4E-17435501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.882436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-17439509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-12440486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-12441490No hitNo description
SMARTSM003531.9E-16442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MSHYSDAQDV ESATAVAAAA LSIHSNEEAK LQYXKGTRES IPISRTKTLQ DLMTGRPNKE  60
ARDAGEVSMK DQRAQESAFP SRYPNRASSS RPSTPANGXQ NQKGSXGRRX AADAKADAWE  120
RAQMKKIQRR YEKVKATIDA WENEKKMKAK AKMERRKREI EQRRARNMQH YQIKQARIDQ  180
IAGGARAQVE EKRRNEESKM TGYSMANKSK SSSAHCLVDR GTISIQLPPS LALVHAGDWA  240
RGRPASNYDV TELKLENGXL AMHGLGALLT AQSNPTWSRS RACDTXESIV DQATCHKRDP  300
NIIRHDQTPA NTSSVVASSG ETWTDSSVQV PPAQGWIRKR SRSXSGFFEN NFSTNSIHEE  360
HADPSSCASP GASVRLCRDN HKTTSTLVSF ESPPSLKTKS TDEDSASHGG LENRDDGRET  420
TKGGGSSRSH STRPRRAAAV HNQSERKRRD LINQKIKALQ RLVPNASKTD KASMLDEVIK  480
YLQQLQAQVQ MMHNLRNFMA NGHMNMNMMV PLEMQQLQLQ HLHQMSLLAH XGIGMGSRIH  540
PTPQSMSMDL FNRMAALYRQ EVTPATAASS SQPRSNHVRR N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444449ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393195.20.0transcription factor PIF7-like isoform X2
TrEMBLA0A498I2S60.0A0A498I2S6_MALDO; Uncharacterized protein
STRINGXP_008393195.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-29bHLH family protein