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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000318376 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 36537.8 Da PI: 7.4768 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv++++ +G+g+W+++++ g+ R++k+c++rw++yl MDP0000318376 14 RGLWSPEEDEKLVRYITTYGPGCWRKVPEQAGLQRCGKSCRLRWLNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.5 | 1.8e-14 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T+eE++l+v++ G++ W+ Ia++++ gRt++++k++w+++ MDP0000318376 67 RGGFTPEEEKLIVRLNGVVGNR-WAHIAKCLP-GRTDNEIKNYWNSW 111 788*******************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.976 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.862 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.52E-11 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGHHYCCKQR KVKRGLWSPE EDEKLVRYIT TYGPGCWRKV PEQAGLQRCG KSCRLRWLNY 60 LRPDIKRGGF TPEEEKLIVR LNGVVGNRWA HIAKCLPGRT DNEIKNYWNS WIKKKLEKPS 120 SPPITSPSNI DHQHNNQMGC SYPNQQEFLS HNFITKPTAP REILYPSPYP LFMFGADEIT 180 IKNINVQSAD QDFPLAVSNN SNNNGTWILD QQQHHQVQAX PPSTAEFTNN NMDAQFLPSL 240 LGSNIGNNNM VPLVVESCGN IDEGGEISME CLQNTTQELN ALVHSRQAQQ CSSNSFHFWD 300 IVEGPSSSNL GSANILSSFP SYQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008392482.2 | 0.0 | transcription factor MYB26 | ||||
TrEMBL | A0A498I546 | 0.0 | A0A498I546_MALDO; Uncharacterized protein | ||||
STRING | XP_008392482.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4112 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 4e-72 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000318376 |