PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000318339

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 1023aa MW: 116710 Da PI: 6.1977

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000318339	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.1	1e-11	56	143	1	70
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkk 70 ++Y++Y+++ GF +r+++s+k+ +r++ it+r+fvC +gk+ +++ +k +++ ++ ++gCka++++ + MDP0000318339 56 NYYQDYGRQKGFWIRTRSSSKTrSRSDDITSRQFVCAHQGKHVSRNIVhetleenedretcexenMKKMNKNCSTVKCGCKASMRIDM 143 69***********9988887578889*********999876688999****998666677788899*******976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-9	56	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-22	140	223	IPR018289	MULE transposase domain
Gene3D	G3DSA:3.30.200.20	3.4E-30	583	681	No hit	No description
CDD	cd05117	6.62E-119	584	826	No hit	No description
SMART	SM00220	1.6E-78	585	827	IPR000719	Protein kinase domain
PROSITE profile	PS50011	39.354	585	827	IPR000719	Protein kinase domain
Pfam	PF00069	3.2E-61	585	827	IPR000719	Protein kinase domain
SuperFamily	SSF56112	6.07E-71	585	828	IPR011009	Protein kinase-like domain
PROSITE pattern	PS00107	0	591	618	IPR017441	Protein kinase, ATP binding site
Gene3D	G3DSA:1.10.510.10	1.7E-45	682	841	No hit	No description
PROSITE pattern	PS00108	0	705	717	IPR008271	Serine/threonine-protein kinase, active site
Gene3D	G3DSA:1.10.238.10	4.7E-46	856	1007	IPR011992	EF-hand domain pair
SuperFamily	SSF47473	5.81E-46	867	1006	IPR011992	EF-hand domain pair
PROSITE profile	PS50222	15.49	870	905	IPR002048	EF-hand domain
SMART	SM00054	6.9E-6	874	902	IPR002048	EF-hand domain
Pfam	PF13499	1.0E-9	875	935	IPR002048	EF-hand domain
CDD	cd00051	9.21E-18	875	935	No hit	No description
PROSITE pattern	PS00018	0	883	895	IPR018247	EF-Hand 1, calcium-binding site
PROSITE profile	PS50222	11.11	906	941	IPR002048	EF-hand domain
SMART	SM00054	3.5E-4	910	938	IPR002048	EF-hand domain
PROSITE pattern	PS00018	0	919	931	IPR018247	EF-Hand 1, calcium-binding site
PROSITE profile	PS50222	15.071	942	977	IPR002048	EF-hand domain
Pfam	PF13499	1.3E-12	945	1006	IPR002048	EF-hand domain
SMART	SM00054	0.0099	946	974	IPR002048	EF-hand domain
CDD	cd00051	1.23E-16	949	1006	No hit	No description
PROSITE pattern	PS00018	0	955	967	IPR018247	EF-Hand 1, calcium-binding site
SMART	SM00054	2.1E-7	980	1008	IPR002048	EF-hand domain
PROSITE profile	PS50222	13.063	980	1011	IPR002048	EF-hand domain
PROSITE pattern	PS00018	0	989	1001	IPR018247	EF-Hand 1, calcium-binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005509	Molecular Function	calcium ion binding
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 1023 aa Download sequence Send to blast
MAESVADFAS NSPSISPVQD TVQVENDETC IPNENSKGLK TPYVGMLFDT MEEARNYYQD 60 YGRQKGFWIR TRSSSKTRSR SDDITSRQFV CAHQGKHVSR NIVHETLEEN EDRETCEXEN 120 MKKMNKNCST VKCGCKASMR IDMPFAPFTX VNHHWQSIQF XCAXLQDETX VTFLWLFETW 180 LEAXGGRHPI TIITXQDLAM KGAIAKVFPN THXRLCLWHI KKKFAXKLSH VYFKKXKFKI 240 EMKKCTRKTY KIDDFEVKWX ALMKEXGLEN DEWLKSLYEM RSSWVPVYNR RIFFAGMNTT 300 GRSEGINSFF DGFVTPTTNL REFVVKYEQA LKKIMERESD EDFESEHKYR IVNEGEFLLQ 360 HAASLYTRNV FNKFKDEWSK VNRYKVEEMP XDNEDHAYXV KSKLGEQEXF VVKLNXQTHK 420 GNEEQEDLGE YVESDDXEYL ERPNLGKGFF QSFTAAIWRN QPPENRLPPP NEGDSIKSGP 480 SSNHDSSKGG SEGNKALDHQ VPEAIEIPPN PVQSTPPPAV KIGNDPHKKA EPEKPNKPEV 540 KEEVSKPPQD ADKSKKPAHM KRISSVGLQV ESVLGRKTGN IKDVYSLGRK LGQGQFGTTF 600 LCVEKETNKE FACKSIAKRK LTTQEDVEDV RREIQIMHHL AGHPNVIQII SAYEDAVAVH 660 VVMELCAGGE LFDRIIQRGH YTERKAAKLA RVIAGVLEAC HSLGVMHRDL KPENFLFVNQ 720 KEDAPLKTID FGLSVFFRPG ETFTDVVGSP YYVAPEVLRK HYGLQCDVWS AETEHGIFEQ 780 VLKGELDFIS EPWPSISESA KDLVRRMLVR DPKKRLTAHE VLCHPWVQID GAAPDKPLDS 840 AVLTRLKQFS AMNKLKKIAI RVIAESLSEE EIAGLKEMFR MIDADNSGHI TLEELKNGLE 900 RVGADVKDSE ISWLMQAADV DNSGTIDYGE FIAAMLHLNK VQKEDHLYAA FSYFDTDGSG 960 HITRDELQQA CEKFGLEDVH LDDIIREVDQ DNDGRIDYSE FVAMMQDTGF GKGLQSNMSR 1020 KVA

Sequence ? help Back to Top

Protein Sequence Length: 1023 aa Download sequence Send to blast

MAESVADFAS NSPSISPVQD TVQVENDETC IPNENSKGLK TPYVGMLFDT MEEARNYYQD  60
YGRQKGFWIR TRSSSKTRSR SDDITSRQFV CAHQGKHVSR NIVHETLEEN EDRETCEXEN  120
MKKMNKNCST VKCGCKASMR IDMPFAPFTX VNHHWQSIQF XCAXLQDETX VTFLWLFETW  180
LEAXGGRHPI TIITXQDLAM KGAIAKVFPN THXRLCLWHI KKKFAXKLSH VYFKKXKFKI  240
EMKKCTRKTY KIDDFEVKWX ALMKEXGLEN DEWLKSLYEM RSSWVPVYNR RIFFAGMNTT  300
GRSEGINSFF DGFVTPTTNL REFVVKYEQA LKKIMERESD EDFESEHKYR IVNEGEFLLQ  360
HAASLYTRNV FNKFKDEWSK VNRYKVEEMP XDNEDHAYXV KSKLGEQEXF VVKLNXQTHK  420
GNEEQEDLGE YVESDDXEYL ERPNLGKGFF QSFTAAIWRN QPPENRLPPP NEGDSIKSGP  480
SSNHDSSKGG SEGNKALDHQ VPEAIEIPPN PVQSTPPPAV KIGNDPHKKA EPEKPNKPEV  540
KEEVSKPPQD ADKSKKPAHM KRISSVGLQV ESVLGRKTGN IKDVYSLGRK LGQGQFGTTF  600
LCVEKETNKE FACKSIAKRK LTTQEDVEDV RREIQIMHHL AGHPNVIQII SAYEDAVAVH  660
VVMELCAGGE LFDRIIQRGH YTERKAAKLA RVIAGVLEAC HSLGVMHRDL KPENFLFVNQ  720
KEDAPLKTID FGLSVFFRPG ETFTDVVGSP YYVAPEVLRK HYGLQCDVWS AETEHGIFEQ  780
VLKGELDFIS EPWPSISESA KDLVRRMLVR DPKKRLTAHE VLCHPWVQID GAAPDKPLDS  840
AVLTRLKQFS AMNKLKKIAI RVIAESLSEE EIAGLKEMFR MIDADNSGHI TLEELKNGLE  900
RVGADVKDSE ISWLMQAADV DNSGTIDYGE FIAAMLHLNK VQKEDHLYAA FSYFDTDGSG  960
HITRDELQQA CEKFGLEDVH LDDIIREVDQ DNDGRIDYSE FVAMMQDTGF GKGLQSNMSR  1020
KVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4mvf_A	1e-95	544	1005	18	496	Calcium-dependent protein kinase 2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in signal transduction pathways that involve calcium as a second messenger.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008392010.1	0.0	calcium-dependent protein kinase 20-like
Swissprot	Q9ZV15	0.0	CDPKK_ARATH; Calcium-dependent protein kinase 20
TrEMBL	A0A498I2H3	0.0	A0A498I2H3_MALDO; Uncharacterized protein
STRING	XP_008392010.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-59	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000318339

Publications ? help Back to Top
Cheng SH,Willmann MR,Chen HC,Sheen J Calcium signaling through protein kinases. The Arabidopsis calcium-dependent protein kinase gene family. Plant Physiol., 2002. 129(2): p. 469-85 [PMID:12068094] Hrabak EM, et al. The Arabidopsis CDPK-SnRK superfamily of protein kinases. Plant Physiol., 2003. 132(2): p. 666-80 [PMID:12805596] Yang T,Poovaiah BW Calcium/calmodulin-mediated signal network in plants. Trends Plant Sci., 2003. 8(10): p. 505-12 [PMID:14557048] Gutermuth T, et al. Pollen tube growth regulation by free anions depends on the interaction between the anion channel SLAH3 and calcium-dependent protein kinases CPK2 and CPK20. Plant Cell, 2013. 25(11): p. 4525-43 [PMID:24280384]