PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000318216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | bHLH | ||||||||
Protein Properties | Length: 567aa MW: 62843.1 Da PI: 10.0997 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.4 | 4.7e-12 | 361 | 407 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L llP + kK++Ka++L A++Y+k+Lq MDP0000318216 361 DHVLAERKRREKLSQRFIALSALLPGL-----KKMDKASVLGDAIKYVKHLQ 407 58899**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.351 | 357 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 361 | 418 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-9 | 362 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.59E-16 | 362 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.91E-12 | 362 | 408 | No hit | No description |
SMART | SM00353 | 3.0E-14 | 363 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MASXVHXRAR NLDVRSXQRL GYSSKVQVPK RFGLGVAAKY SPRVAVGHEP RELGRGKIKA 60 QEAQRXAGKL GQAXGGLGAS CSSKLTLGRN LVVECSSTTK KKKTKKSVGF XQATPPRMAX 120 RGKEVVRTPE PYIIGPVHSI FLIFLLFSHR LDVERVRIPI KDYNCKTLPS WRTGKTRTWI 180 VFTGRKEMED PTFINQYAMS SLDYSLDELI FSPFSSESYS SYPNFTSKTA AVTHNFSKAF 240 IENPHQTGSQ ERPAKQPKNT TSWKSCSTDH IIAAKASXSS SSHLISFENS DSSPPTTSQQ 300 YNGLDCKVIK PKNEVEYSNG KLNLPALISQ GSYDTQTCSP KHGXGIKRAA TVTRSPLHAQ 360 DHVLAERKRR EKLSQRFIAL SALLPGLKKM DKASVLGDAI KYVKHLQERT KVLEEQAAKK 420 TGEAVVFVKR MQYSADDDIS SSDENSESCS DQPLPEIEAR VSDKEVLIRI HCEKTKGCLT 480 SILSEIEKLG LTIVHSCALP FGNSTLDITV VAQMDXQFSM TVKDLVRASH VPTNESGATE 540 IDAWASHNGR LGFQRLLQRS LTTWPNL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 365 | 370 | ERKRRE |
2 | 366 | 371 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008383359.2 | 0.0 | transcription factor bHLH18-like isoform X2 | ||||
TrEMBL | A0A498KQJ8 | 0.0 | A0A498KQJ8_MALDO; Uncharacterized protein | ||||
STRING | XP_008383359.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 1e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000318216 |