PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000318216
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 567aa    MW: 62843.1 Da    PI: 10.0997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000318216genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12361407455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h  +Er+RR+++ ++f  L  llP +     kK++Ka++L  A++Y+k+Lq
  MDP0000318216 361 DHVLAERKRREKLSQRFIALSALLPGL-----KKMDKASVLGDAIKYVKHLQ 407
                    58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15361418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9362407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-16362420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-12362408No hitNo description
SMARTSM003533.0E-14363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MASXVHXRAR NLDVRSXQRL GYSSKVQVPK RFGLGVAAKY SPRVAVGHEP RELGRGKIKA  60
QEAQRXAGKL GQAXGGLGAS CSSKLTLGRN LVVECSSTTK KKKTKKSVGF XQATPPRMAX  120
RGKEVVRTPE PYIIGPVHSI FLIFLLFSHR LDVERVRIPI KDYNCKTLPS WRTGKTRTWI  180
VFTGRKEMED PTFINQYAMS SLDYSLDELI FSPFSSESYS SYPNFTSKTA AVTHNFSKAF  240
IENPHQTGSQ ERPAKQPKNT TSWKSCSTDH IIAAKASXSS SSHLISFENS DSSPPTTSQQ  300
YNGLDCKVIK PKNEVEYSNG KLNLPALISQ GSYDTQTCSP KHGXGIKRAA TVTRSPLHAQ  360
DHVLAERKRR EKLSQRFIAL SALLPGLKKM DKASVLGDAI KYVKHLQERT KVLEEQAAKK  420
TGEAVVFVKR MQYSADDDIS SSDENSESCS DQPLPEIEAR VSDKEVLIRI HCEKTKGCLT  480
SILSEIEKLG LTIVHSCALP FGNSTLDITV VAQMDXQFSM TVKDLVRASH VPTNESGATE  540
IDAWASHNGR LGFQRLLQRS LTTWPNL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365370ERKRRE
2366371RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008383359.20.0transcription factor bHLH18-like isoform X2
TrEMBLA0A498KQJ80.0A0A498KQJ8_MALDO; Uncharacterized protein
STRINGXP_008383359.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-54bHLH family protein