PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000318097

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 348aa MW: 38520.3 Da PI: 6.6739

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000318097	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.8	3.6e-13	50	124	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA++vGFs+ + +++k +g i++ +f+Cs+e +++++ + gC+a+l++++++ + w+ tk++++H H+++ MDP0000318097 50 LYDAYARNVGFSTHVGLFSRTKPDGPIVTWDFTCSREVFKRKNVE--------------GCNAMLRIERKDANSWVATKFVEDHYHSMV 124 6************************************998764..............6************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-10	50	124	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MAENNEPDKG GKQNVNENFS GREINIQDDD GSSKPHVGME FESEDAVKTL YDAYARNVGF 60 STHVGLFSRT KPDGPIVTWD FTCSREVFKR KNVEGCNAML RIERKDANSW VATKFVEDHY 120 HSMVSPSKVH YLRPRRHING ATKNTTETLD ATTGAYFSMD GNHVSYEPNR GDQDRAIQVA 180 AAQVFPETWH CICKWHILRE AIKYAEEGAV AVETYNAAMS ALREGGKKIA VVKKNVAKVT 240 PPSSQGSGNI QEDSMKTAQL PTGEMAPSSW PWQEPYRFNL NDGGVPVADL NQPSMIPISI 300 HPDGGNPDST VVVTCFKSMT WVIENKNSTS AGKVAVINLK VCISLLYM

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MAENNEPDKG GKQNVNENFS GREINIQDDD GSSKPHVGME FESEDAVKTL YDAYARNVGF  60
STHVGLFSRT KPDGPIVTWD FTCSREVFKR KNVEGCNAML RIERKDANSW VATKFVEDHY  120
HSMVSPSKVH YLRPRRHING ATKNTTETLD ATTGAYFSMD GNHVSYEPNR GDQDRAIQVA  180
AAQVFPETWH CICKWHILRE AIKYAEEGAV AVETYNAAMS ALREGGKKIA VVKKNVAKVT  240
PPSSQGSGNI QEDSMKTAQL PTGEMAPSSW PWQEPYRFNL NDGGVPVADL NQPSMIPISI  300
HPDGGNPDST VVVTCFKSMT WVIENKNSTS AGKVAVINLK VCISLLYM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008375417.2	1e-100	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_017188898.2	1e-100	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_028961065.1	1e-100	protein FAR1-RELATED SEQUENCE 3-like
TrEMBL	A0A2P5Y5Q2	1e-118	A0A2P5Y5Q2_GOSBA; Uncharacterized protein
STRING	XP_008375417.1	1e-100	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	3e-32	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	MDP0000318097