PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000317257
Common NameLOC103405833
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 88aa    MW: 10402.7 Da    PI: 9.3909
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000317257genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-151360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ll ++++ +G g W+  +++ g++ ++k+c++rw++yl
    MDP0000317257 13 KGAWTREEDDLLRQCIEIHGEGKWRQLPNKAGLNTCRKSCRLRWLNYL 60
                     79*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.336864IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-201163IPR009057Homeodomain-like
SMARTSM007172.1E-121262IPR001005SANT/Myb domain
PfamPF002491.7E-141360IPR001005SANT/Myb domain
SuperFamilySSF466898.98E-211488IPR009057Homeodomain-like
CDDcd001679.99E-91560No hitNo description
PROSITE profilePS500903.9036188IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-66487IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MEGCNVNLSV XRKGAWTREE DDLLRQCIEI HGEGKWRQLP NKAGLNTCRK SCRLRWLNYL  60
KPNIKRGDFT EDEVDLTIRL HKLLGNRY
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7114741e-143JN711474.1 Malus x domestica cultivar Golden Delicious MYB110b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280759.16e-58uncharacterized protein LOC103405833
SwissprotQ9FNV96e-34MY113_ARATH; Transcription factor MYB113
TrEMBLK4F7L61e-56K4F7L6_MALDO; MYB110b
STRINGXP_008343062.12e-56(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-36myb domain protein 113
Publications ? help Back to Top
  1. Chagn
    An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes.
    Plant Physiol., 2013. 161(1): p. 225-39
    [PMID:23096157]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]