PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000315764
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 640aa    MW: 72237.7 Da    PI: 8.9381
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000315764genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.97.3e-25250295146
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
         SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 
                    krienksnrqvtfskRrng+lKKA+ELS+LC+a v +iifs +gk+
  MDP0000315764 250 KRIENKSNRQVTFSKRRNGLLKKAFELSILCNAGVVLIIFSGRGKI 295
                    79******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.31E-22242295IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-29242300IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.081242295IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-22244264IPR002100Transcription factor, MADS-box
PfamPF003198.7E-22251295IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-22264279IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-22279300IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.1740.108.1E-18439490No hitNo description
SuperFamilySSF1434569.42E-37447636No hitNo description
PfamPF026228.1E-33464626IPR003774Protein of unknown function UPF0301
Gene3DG3DSA:3.40.1740.108.1E-18579629No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
LFLHLGLAFD VLLLSSEISA RELAETTAQT QDSVEKACDC DQGRSDSDHL RGSHKAEREL  60
RKHSTKEEER EIQRKERSSS DSELGTKEEQ RICKICNIPK MSPQLTEAYA CVPSTKRGRG  120
VLISGDPKSD KLLYANGRYT WTGFCSHTRL TKHRFSLNPT TLKKHSEKQP YAKAITNGCA  180
NFCEHEWASI TPHFKNLENL LNGSSGPRPR RLQSLFLPLR PLATSDLNRV YRERERKRER  240
EMGIGKVELK RIENKSNRQV TFSKRRNGLL KKAFELSILC NAGVVLIIFS GRGKIENAPR  300
KCATVGTVQI PQARNKHAKA RGHYSKQGSS FKSFISVHHL VEKEESKRQT QWKVFSFHIL  360
PTFTEHGNDD RSIPEGDSEQ ENXSSENFND TSSQKNCQIK SDWREVRARL YTMEQEEKAE  420
PDAXNQGGEP HQSKPLGLKW AHPISVPETG CVLVATEKLD GVRTFERTVV LLLRSGSRHP  480
EEGPFGVVIN RPLHKKIKHM KPTNLDLATT FSDCSLHFGG PLEASMFLLK SGGKSNLPGF  540
EEVIPGLCFG ARNSLDEAAA LVKKGVLKPQ DFRFFVGYAG WQLDQLAEEI ESDYWYVAAC  600
SSNLIFGASS ESSXESXWEE ILQEMGGRYS ELSRKPKQDM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.14240.0bud| fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498JAI90.0A0A498JAI9_MALDO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.31e-22MIKC_MADS family protein