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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000315688 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28230.2 Da PI: 8.7468 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.5 | 1.1e-20 | 30 | 78 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kr+e+k +r+vtfskR+ gi+ KA ELSvL++ae a i++ss+gk++ + MDP0000315688 30 KRVEDKNKRHVTFSKRKRGIFNKAAELSVLTGAETAAIVVSSNGKVFCF 78 799******************************************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.815 | 22 | 82 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-26 | 22 | 81 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.81E-24 | 24 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-18 | 24 | 44 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-19 | 31 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-18 | 44 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-18 | 59 | 80 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MAKGPDNKIT DKDIANGKKE RECRRRVEIK RVEDKNKRHV TFSKRKRGIF NKAAELSVLT 60 GAETAAIVVS SNGKVFCFGS PSPDAVIDLY LGDNTSLLPE GQPDNHLQNN NIHHSSSKKQ 120 IEDYVXASRR LKEAKILKGG KNSNNNGGEG GETGCSYGWW ERWIGMMSSL EELEEYRDAL 180 YKLKHNVEVR TNQMIRETSP SNHFSPLLFX DDIWSSPELS QGQGWPRNLI SSYDIDVKKY 240 DWNGVTYLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 3e-17 | 16 | 105 | 12 | 99 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 3e-17 | 16 | 105 | 12 | 99 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008342514.2 | 0.0 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A498HDU1 | 0.0 | A0A498HDU1_MALDO; Uncharacterized protein | ||||
STRING | XP_008342514.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16581 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-18 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000315688 |