PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000315500
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 896aa    MW: 98938.3 Da    PI: 6.7412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000315500genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32.1e-068368771055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + RR ri +++ +L+el P+     +k  + ae L +Av +Ik+Lq
  MDP0000315500 836 QMRRTRISERMKKLQELFPNM----DKQTNTAEXLDLAVGFIKDLQ 877
                    57******************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1099059.81E-15146211IPR000061SWAP/Surp
SMARTSM006488.0E-13161215IPR000061SWAP/Surp
PROSITE profilePS5012813.416163206IPR000061SWAP/Surp
PfamPF018055.6E-11164208IPR000061SWAP/Surp
SMARTSM004433.3E-16356403IPR000467G-patch domain
PROSITE profilePS5017417.246358405IPR000467G-patch domain
PfamPF015853.5E-14359402IPR000467G-patch domain
PROSITE profilePS5088810.41826876IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-10836891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-5838880No hitNo description
Gene3DG3DSA:4.10.280.104.5E-9839892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0003723Molecular FunctionRNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MDKGVTPSLF VNDGSFMERF RQLQQEKDKD KGSAADESRP SKVVPGTLTP TTTGKTSAEL  60
KANDARKVAA ASGSKLAFSL KQKSKIVAPP VKLGADEDED EADAANVAAG VPTKRQKLGQ  120
PDAVEESYRQ VDVGNYCLYA YPLTLLIAIK TPPFPTDSTV KIVADKLASF VAKHGRQFEH  180
ITRQKNPGDT PFKFLFDESC SDYKYYEYQL AIEEKALQQT RDSQTSRNGG TSMSASKSTS  240
SSQRSTVNHP NYQTSASALY DDTEGRTGEL TAPTGADPIA MMEYYVKKAA QEERKRQPKQ  300
SKDEMPPPAS LQAPSLNKGH HMGDYIPQEE LEKFMAACND AAAQKAAKEA ADRAKIQADN  360
VGHKLLSKMG WKEGEGLGSS RRGISDPIMA GNVKKDNLGV GAQQPGEVTA EDDIYEQYKK  420
RMMLEQSAKG ILLTDLAATL SXRHICEVGK LITALDVEHL YDWGXRRFSI VDLAEGILVI  480
NQQTETAMLI AFLNPMGGIR IAGTEKHKDS RLLELQSSFP ATKVPSLGGR AEEEPRGGVH  540
GFEYFPPAAE LRLNAHQFEI QERPVNVKGX AXDSVSEHIN GYXNSTHXMY QAPQGQQAHG  600
LDSSSFAXVN XTGMENSMXQ XKIGVGNRSN XVRQSSSPAG VFPNSTVDDG FNVMKDSAGY  660
RXGNGTNGEA SXSTSRFGNQ LSFSSRQSSY SGRMPRIAED ENGNLGEXEN ANGSNSPYQS  720
SFPDDSXDDS SFNDLKXARD XDGNKFSTST AFESQNNDFG HRNXGXTQHL RFXXHFEMPA  780
MEKYLQFEDS IPRKIRAKRG FATHPRSIAE RDSVAELHVT IARLYXIRDR EYCEFQMRRT  840
RISERMKKLQ ELFPNMDKQT NTAEXLDLAV GFIKDLQKQV XTLKDTKAKC SCSSEQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.18370.0bud| cell culture| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-38bHLH family protein