PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000311522
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 658aa    MW: 74104 Da    PI: 8.4684
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000311522genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-193589256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   +++ +f++eq++ Le+ Fe+++ +  +++ +LAk+lgL+ rqV++WFqN+Ra++k
  MDP0000311522 35 KNKKRFSDEQIRSLESIFESESRLEPRKKMQLAKELGLQPRQVSIWFQNKRARWK 89
                   67789*************************************************9 PP
2HD-ZIP_I/II116.31.8e-3736127293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    +k+r+s+eq+++LE+ Fe+e++Lep++K++la+eLglqprqv +WFqn+RAR+k+kqlE++y+ L+++y++l+++ e+++ke+++L  ++++
  MDP0000311522  36 NKKRFSDEQIRSLESIFESESRLEPRKKMQLAKELGLQPRQVSIWFQNKRARWKSKQLEREYSILRANYNNLASKFEAMKKEKQALVVQVQK 127
                    79************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.92E-191493IPR009057Homeodomain-like
PROSITE profilePS5007118.3823191IPR001356Homeobox domain
SMARTSM003893.5E-173395IPR001356Homeobox domain
PfamPF000461.4E-163589IPR001356Homeobox domain
CDDcd000869.82E-173592No hitNo description
Gene3DG3DSA:1.10.10.603.4E-193698IPR009057Homeodomain-like
PRINTSPR000312.5E-56271IPR000047Helix-turn-helix motif
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PRINTSPR000312.5E-57187IPR000047Helix-turn-helix motif
PfamPF021835.0E-1591132IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MLDQIEYSSP SAEDHETFSC MSSPGAATTR RKNDKNKKRF SDEQIRSLES IFESESRLEP  60
RKKMQLAKEL GLQPRQVSIW FQNKRARWKS KQLEREYSIL RANYNNLASK FEAMKKEKQA  120
LVVQVQKLNN LMMQRENRGE DVAMNSGIDG ESDNGDATIS ESDQVKLDLS VEKSEQGELG  180
VLSDDDSSIK AEYFGLEDES NLVNLVEYVD GSLTSAEDWR KLNSDGLFDE STELQIATTP  240
SSKSPPPPRP RTTRRPATVL NDHGQNIALT LGRGMPLSAQ SSSIMCLMVC DSRAIAFSTS  300
NDSPSELFKV IFFDDGDMSL EAHSVSGSLH SRTHLFSGPL RLNLHPHCRP QRPLLRLFPP  360
ALRPRRRLRR LECTALGDQS CRLLVPRLGS GVRPPPRPAR TARQNYWGAH SLALLARCYG  420
FLIIFYWVSV LLSKIASCGS LSLESSYEKA TGCIYASTLL YEYRGLTLQP GNVKRSCFQW  480
HLAYCENFMS SIRELCLIMS FAIFCLLYIG KLTSISLIVF VMLGLLCDEA LRAIVKAGSG  540
CKVIPLIVES KLVNTKRCRI LSPHLRKWLT ERNLSSESRL LRLEEGYVQE GSSVTVFGML  600
HRNNEMTTIV QPPEVISTGC LWRKLLLPVD VDGMILRVYQ TAAGHSINQD SIQQAERW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362368RPRRRLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.262800.0bud| flower| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8879863e-51KF887986.1 Malus hupehensis S-phase kinase-associated protein 1-like protein 4 (SKP1-4) mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-56homeobox 7