PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000310918
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 663aa    MW: 74142.2 Da    PI: 9.8656
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000310918genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-102273348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                      W t+E++ll++av+++G+ +W+++a ++         +t+  ck ++++++
    MDP0000310918 22 TWGTWEELLLACAVHRFGTQSWDSVATELRkrssnlHLLTPHACKRKFHDLR 73
                     7*****************************9999997799999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002493.1E-102272IPR001005SANT/Myb domain
CDDcd001676.23E-52272No hitNo description
SMARTSM002971.4E-793413IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.3E-16289422IPR001487Bromodomain
SuperFamilySSF473707.59E-16292417IPR001487Bromodomain
CDDcd043691.79E-12314408No hitNo description
PfamPF004391.7E-8320398IPR001487Bromodomain
PROSITE profilePS5001410.788322394IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MAEAMADFGR GSPXFPEKQT PTWGTWEELL LACAVHRFGT QSWDSVATEL RKRSSNLHLL  60
TPHACKRKFH DLRRHFNHSD NVSAASNDDK SPIPWLHQLR QRRLDELRRE LQRYDRSIVC  120
LQSKVXRLKE VREHSLRETQ KPVEKSDLEK TGDEEIKPDD VSPEKKEISS DFLVHDGQSF  180
DESNTTDRKP EEPGTGYAGT GNGSEPNKSV EPAGEEIGSA EKSSNPAVED SCNGSSDSVA  240
KEPAGQRESM AESKGVAEGT KESRQSSSEV KSSVRLSRKA GNDPEPVGPG EPSEPEQEDE  300
SPATKRVPVE SQPLVDFLEI LRSHKFASLF GRRLHSQDNP IYTKMIRQNV DFEMVQTRLE  360
GGWYSHCSRM LFFRDLLIIC NNAIVFFGKM SPEYKAACEL RSLXSKEMAR LAPKQDAPPE  420
EEILTQPAPP LNPDPETSDS LLAKSKLSLP LNACRKRSSI AARGSTSSSG PDTRKEQATR  480
DVKPAVNWKQ KEVSLDEIEK LRVTKKRRKE RLGSSTRNNT SKNVRTRSYS NNDRSSDANE  540
NSESKSETEK KSRVVSSNEN SETKAEMEKK RNNNASGKKQ SATNFLSRMK SSSSKTGSLL  600
ETSKNPENNS KGRRAEQRKN GNGKGNTQKD QGSRRSSGGR QAAKEQESPS KRSVGRPSKR  660
RQX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1504508KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008366631.20.0uncharacterized protein LOC103430277
TrEMBLA0A498IDU10.0A0A498IDU1_MALDO; Uncharacterized protein
STRINGXP_008350276.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.14e-62DNA-binding bromodomain-containing protein