PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000309680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | B3 | ||||||||
Protein Properties | Length: 869aa MW: 96337.6 Da PI: 6.6093 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.4 | 8.6e-21 | 642 | 738 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ ++ + MDP0000309680 642 QKVLKQSDVGSLGRIVLPKKEAETHlpELDARDGISIAMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCNK 734 79*************************99999*********7778*********777777777777.********************..5558887 PP .EEE CS B3 92 lvvk 95 ++++ MDP0000309680 735 YMIR 738 7766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-28 | 634 | 744 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 5.12E-35 | 639 | 740 | No hit | No description |
SuperFamily | SSF101936 | 4.05E-23 | 640 | 736 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.9E-21 | 641 | 743 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.715 | 641 | 743 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-17 | 642 | 737 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 869 aa Download sequence Send to blast |
MKGEKVQVQV PVLHHHQDLX AEDQEDTLGV DHGEMWLDDG QETALLADIN DPSIFYNDHF 60 PPLPDFPCMS SSSSSSSTPA PVKPVTCSSS SSSSVSSSSS AASWAVLKSD AEPEDGERKR 120 QPNQNSYHHQ HSQIDDQTVD AHALSSTASM EISQPLDLGG GGGGIDCMEE TETFGYMDLF 180 EPNEFFYPSS IFQSDSLFME QFQQDQDNQQ LAMAQLLQDH HESATTIQSN PQQQKQVVGH 240 DEENTNKDLS NENKDPDDMA MVFLEWLRSN RETVSAEDLR SVKIKKSTIE CAARRLGGGK 300 EAMKQLLKLV LEWVQTNHLQ KRRSNSITTK DSNIITQQQY QDPFLNPNPN PSSRVFESNP 360 SRNFTQTQWM APPPHAAAYD PAAGGLLIPT PPPAPPPPAT YTSMIGYMAA DPFGNGPSPY 420 QTSPEYHHHM IESGQPSWPS SPFGMGTAPY GSFPDNNIHL APPQHHPQAF AGYGSQYQPY 480 QYFPGNGEHQ LMRLGSSATK EARKKRMARQ XRLVSHHRHH GHQQNSQQLN NQMPDHHHLQ 540 QTRLVGNTTD LNCTGAVPLQ ANPGNWFYWP TATAAPSPSA IAMMPSIMQE AAPLPPVQQM 600 DRPASTQAQN YNHGRSAVQE RQERQERRQG WKSEKNLKFL LQKVLKQSDV GSLGRIVLPK 660 KEAETHLPEL DARDGISIAM EDIGTSRVWN MRYRYWPNNK SRMYLLENTG DFVRANGLQE 720 GDFIVIYSDV KCNKYMIRGV KVRXAGPKSE RQAGPKSEGN KRPGKSQRNQ HASTPPGNNG 780 SSPSSATTAH KKERVNGSSG DNRDGNNIGG DGRDNEGGAN SKWXWWRWWP RHRWPCDVSD 840 GATLVVAIGG GGDKGGNGGV VDRVILAVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 3e-38 | 637 | 741 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 3e-38 | 637 | 741 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the embryos, endosperm, and outer teguments of the seed throughout seed development. {ECO:0000269|PubMed:12657652}. | |||||
Uniprot | TISSUE SPECIFICITY: Isoform 2 accumulates only at the end of seed maturation. {ECO:0000269|PubMed:20525852}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008372613.2 | 0.0 | B3 domain-containing transcription factor ABI3-like isoform X2 | ||||
Swissprot | Q01593 | 1e-166 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A498JT46 | 0.0 | A0A498JT46_MALDO; Uncharacterized protein | ||||
STRING | XP_008372613.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9448 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 8e-86 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000309680 |