PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000308863 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | Dof | ||||||||
Protein Properties | Length: 303aa MW: 33856.1 Da PI: 4.8734 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.7 | 1.1e-37 | 39 | 93 | 6 | 60 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ MDP0000308863 39 PNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 93 58***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 32 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.668 | 39 | 93 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.1E-32 | 39 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 41 | 77 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MFTDPTVKQM LQCPPSGQGQ FMMMEMKRPW NKSHIEVAPN CPRCASSNTK FCYYNNYSLS 60 QPRYFCKGCR RYWTKGGSLR NVPVGGGCRK NRRGKATRLS QTDSASLSYF QHHNSSSGTE 120 DDPSGNNQPG GSNASDIDLA VVFAKFLNHN STTPDDHYHD PNLVISSSAL NDHDGSQNSS 180 KAGDLVEAVD HYLLEGHQQS QEENVQTFMG INHNDDMNIH EFELQGLPVD EDQVVQDVFW 240 SDDATMSSLA SSTASFTWQP MVHLQELDCS LPSDDDQMKI STNLCGDNWS TFDFSGFEVF 300 SRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008339132.1 | 0.0 | dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A498K1B1 | 0.0 | A0A498K1B1_MALDO; Uncharacterized protein | ||||
STRING | XP_008339132.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1817 | 33 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 2e-45 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000308863 |