PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000308670

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 1553aa MW: 176248 Da PI: 7.0937

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000308670	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.4	1.8e-31	89	180	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ +++eHnHel+p MDP0000308670 89 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVKEHNHELVP 180 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-30	89	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.8E-31	301	393	IPR018289	MULE transposase domain
Pfam	PF04434	4.0E-11	569	615	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.004	581	617	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.2E-8	592	619	IPR006564	Zinc finger, PMZ-type
Pfam	PF10551	4.2E-25	1023	1115	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.67	1291	1339	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-11	1296	1339	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.9E-9	1314	1341	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1553 aa Download sequence Send to blast
MDNEVIEFDI GLGGGGGRDG EDDFVDIEHP VDDEEMVDSP LLGSGTGSGS GIVFGGGGSG 60 EIYFPEGDLL DLEPYDGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF 120 VCAKEGFRNL NEKRTKDREI KRPRTITRVG CKASLSVKMQ DSGKWVVSGF VKEHNHELVP 180 PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR 240 NNRHKSLDGD IQMLLDYLRQ MQADXHNFFY AVQGDDDQSM GNVIWADPKA RMNYSYFGDT 300 VTFDTTYRSN RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFVWLFKT WLMAMSGRPP 360 VSITTDHDPV IQSAITQVFP QTRLRFCKWH IFKKCQEKLS HVFLKHPTFE ADFHKCVNLT 420 ESIEEFESYW LSLVDRYNLR DHEWIQMVYS ARRQWVPVYL RDTFFAEMSI TQRSDSINSY 480 FDGYVNASTN LNQFFKLYEK ALESRNEKEV KADFETMNTA PVLKTPSPME KQASELYTKK 540 IFMRFQEELV GTLTLTASKG DDDGEIITYQ VAKFGEDHKA YFVKFNVLEM MAACSCQMFE 600 FSGLLCRHVL AVFRVTNVLT LPSHYILKRW TRNAKSSVML EERSSDVYTN YLESHTVRFN 660 TLRHEAFKFV DGARSSETYD IXVEALKEAA KKVAHATKHE GKSMVNGHVR GNLAXGASQA 720 ARCASGDHEG SSGQHLSEDD MDKKIRELTN ELECANRKCE VYRANLLSVL KDIEDHKSQL 780 SIKSATVTFR EEKSLYECLH KKTGVRAERF IGDMIFLSRV QSTIRMIVSR NRQCHXMIDR 840 TIERLQISVY VVFSSDDLKI KLAAHPYSDS IGSGFASKVV SIHPNKRGRA CTRASPSLST 900 LKSQETQSPE DDGDRDLPLI LTKAHYSFQV AELDSSFGDG KLLQCPDESG HDDGDKFRSY 960 MSGIRQRTLG GGGQHVLDYL KRMQADNPTF FYAVQGDSDH SSGNIFWVDA TARLNYTYFG 1020 DAVIFDTSYR TNRYRVPFAS FSGFNHHGQP VLFGCALILN ESESSFVWVF QTWLHAMAGC 1080 LPVSLTTDPD RHMQVAVAQV LPQTRHRFCK WAIFKETQEK LDQLYHSHPT FETEFKKCIN 1140 ESETIDEFES HWQSLLGRYY IMDNEWLQSM YNARQQWVPV YMKDTFFGEF AVNEGSERLA 1200 LFFDGFVNVS TTMQVLLKQY EKALVSWHEM ELKADYDTTS TMPVLKTPSP MEKQAANLYT 1260 RRVFKKFQEE LVETMANPAT KINDSGTVAT YRVAKFGEDH KAHAVSFNSF EMKASCSCQM 1320 FEYSGIICRH ILAVFRAKNV LTLPPQYVLK RWTRNAKSGA GGAMLDERAS ESPRNSRESV 1380 TVGYNNLRQE AIKYVEEGAK SIHIYNVAMN ALQEAAKKVA ATKNKGSGAT QGSSLANGGS 1440 QEIHATEANE MAGYQPTDEK EKKIRELSAE LENTNQRCEV YRANLLAVLR DMEEQKMKLS 1500 VKVKPRHSVF PSQDPAGSTT VXFXSSGLPG VTWREREDGF RGRLPXGVGS ICI

Sequence ? help Back to Top

Protein Sequence Length: 1553 aa Download sequence Send to blast

MDNEVIEFDI GLGGGGGRDG EDDFVDIEHP VDDEEMVDSP LLGSGTGSGS GIVFGGGGSG  60
EIYFPEGDLL DLEPYDGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF  120
VCAKEGFRNL NEKRTKDREI KRPRTITRVG CKASLSVKMQ DSGKWVVSGF VKEHNHELVP  180
PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR  240
NNRHKSLDGD IQMLLDYLRQ MQADXHNFFY AVQGDDDQSM GNVIWADPKA RMNYSYFGDT  300
VTFDTTYRSN RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFVWLFKT WLMAMSGRPP  360
VSITTDHDPV IQSAITQVFP QTRLRFCKWH IFKKCQEKLS HVFLKHPTFE ADFHKCVNLT  420
ESIEEFESYW LSLVDRYNLR DHEWIQMVYS ARRQWVPVYL RDTFFAEMSI TQRSDSINSY  480
FDGYVNASTN LNQFFKLYEK ALESRNEKEV KADFETMNTA PVLKTPSPME KQASELYTKK  540
IFMRFQEELV GTLTLTASKG DDDGEIITYQ VAKFGEDHKA YFVKFNVLEM MAACSCQMFE  600
FSGLLCRHVL AVFRVTNVLT LPSHYILKRW TRNAKSSVML EERSSDVYTN YLESHTVRFN  660
TLRHEAFKFV DGARSSETYD IXVEALKEAA KKVAHATKHE GKSMVNGHVR GNLAXGASQA  720
ARCASGDHEG SSGQHLSEDD MDKKIRELTN ELECANRKCE VYRANLLSVL KDIEDHKSQL  780
SIKSATVTFR EEKSLYECLH KKTGVRAERF IGDMIFLSRV QSTIRMIVSR NRQCHXMIDR  840
TIERLQISVY VVFSSDDLKI KLAAHPYSDS IGSGFASKVV SIHPNKRGRA CTRASPSLST  900
LKSQETQSPE DDGDRDLPLI LTKAHYSFQV AELDSSFGDG KLLQCPDESG HDDGDKFRSY  960
MSGIRQRTLG GGGQHVLDYL KRMQADNPTF FYAVQGDSDH SSGNIFWVDA TARLNYTYFG  1020
DAVIFDTSYR TNRYRVPFAS FSGFNHHGQP VLFGCALILN ESESSFVWVF QTWLHAMAGC  1080
LPVSLTTDPD RHMQVAVAQV LPQTRHRFCK WAIFKETQEK LDQLYHSHPT FETEFKKCIN  1140
ESETIDEFES HWQSLLGRYY IMDNEWLQSM YNARQQWVPV YMKDTFFGEF AVNEGSERLA  1200
LFFDGFVNVS TTMQVLLKQY EKALVSWHEM ELKADYDTTS TMPVLKTPSP MEKQAANLYT  1260
RRVFKKFQEE LVETMANPAT KINDSGTVAT YRVAKFGEDH KAHAVSFNSF EMKASCSCQM  1320
FEYSGIICRH ILAVFRAKNV LTLPPQYVLK RWTRNAKSGA GGAMLDERAS ESPRNSRESV  1380
TVGYNNLRQE AIKYVEEGAK SIHIYNVAMN ALQEAAKKVA ATKNKGSGAT QGSSLANGGS  1440
QEIHATEANE MAGYQPTDEK EKKIRELSAE LENTNQRCEV YRANLLAVLR DMEEQKMKLS  1500
VKVKPRHSVF PSQDPAGSTT VXFXSSGLPG VTWREREDGF RGRLPXGVGS ICI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.7918	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028958154.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_028958155.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	M5VLX0	0.0	M5VLX0_PRUPE; Uncharacterized protein
STRING	XP_009358905.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000308670

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]