PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000307943
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 494aa    MW: 55365.9 Da    PI: 7.1385
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000307943genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-11201241545
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                    k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  MDP0000307943 201 KTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLTQLEQEL 241
                    7789************************8766666655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.9E-9194243No hitNo description
SMARTSM003388.4E-9197269IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.243199243IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.48E-7201244No hitNo description
CDDcd147082.19E-22201253No hitNo description
PfamPF001702.4E-8201241IPR004827Basic-leucine zipper domain
PROSITE patternPS000360204219IPR004827Basic-leucine zipper domain
PfamPF141446.1E-31292365IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MASSIQENSN QLEHQQQQHH HQIQDQHHXH QQQQIQYGMM QSSSSNIPAG NFISNKDGXA  60
AYDXGELDQA LFLYLDGQSQ DHHNPSVNHV HHQDQRHPHQ NNSSSGMRPP TLNIFPSQPM  120
HVEPSSTQAA ATGLVSSSSS GSKRPSLPSM ELANPRNDCT APPPPSGPPQ QPAKAIKREG  180
NRKGPTTSSS EQEGPKTPDP KTLRRLAQNR EAARKSRLRK KAYVQQLETS RIKLTQLEQE  240
LQRARSQGMF LGGGLVGGEQ QNLPVGINNI SSDAAVFDME YARWLEEHHR LMCELRAAVQ  300
EHLPENELRL FVDNCLAHYD EVLNLKGMVA KTDVFHIVSG MWKSPAERCF MWMGGFRPSD  360
VIKIILNQIE PLTEQQLLGI CGLQQSTQET EEALSQGLEA LNQSLSETIT SDSLSCPPNM  420
ANYMGHMAIA MNKLSTXEXF VIQADNLRQQ AIHRLQQILT TRQAARCLLA IAEYFHRLRA  480
LSSLWMARPR QDQS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.130460.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008351787.20.0bZIP transcription factor TGA10-like
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A498HYB50.0A0A498HYB5_MALDO; Uncharacterized protein
STRINGXP_008351787.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47313455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.30.0bZIP family protein