PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000307685

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 470aa MW: 51674.1 Da PI: 6.5136

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000307685	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	370	415	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + +++L +AveYIk+Lq MDP0000307685 370 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVEYIKDLQ 415 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.799	364	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.3E-15	367	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.58E-13	368	419	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.3E-14	369	424	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-12	370	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-9	370	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MESDLQQHHK PQQHMNSGLM RYRSAPSSYF TNILDSELYE PFFNRPSSPE TERILARFLA 60 SEVGGNGGGG GGGGGGTEQI ASQHKVATQV NNQQPQFLVP KVDDEVEVIQ QHKQQQQQQQ 120 QQQQQQSNLN NYSSVAQGFY QSPAAKPPLP NQNLTSANEG AYSMRGSHLP PMKTGSGVAN 180 SNLIRHSSSP AGWFSNMNID VAGYAALRGM GNFGARDSTN EEASFSPASR LKNFSSVPPS 240 TSELISPISE IGNKRMRSNS LDARGFGDGR GNNYATGFPM DSWDDSAILG DDISSSTGFR 300 DDDVKAYTGL SPSETQDVEA GSRPPTLLAH HLSLPKTATE MAAIEKFLQL QDSVPCKIRA 360 KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKQTNT SDMLDLAVEY IKDLQTQVQL 420 WSSSNLSNPH FPSEETELHE DSTHATLCEK VTYKVKTHGD VYGQTCFFLA

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MESDLQQHHK PQQHMNSGLM RYRSAPSSYF TNILDSELYE PFFNRPSSPE TERILARFLA  60
SEVGGNGGGG GGGGGGTEQI ASQHKVATQV NNQQPQFLVP KVDDEVEVIQ QHKQQQQQQQ  120
QQQQQQSNLN NYSSVAQGFY QSPAAKPPLP NQNLTSANEG AYSMRGSHLP PMKTGSGVAN  180
SNLIRHSSSP AGWFSNMNID VAGYAALRGM GNFGARDSTN EEASFSPASR LKNFSSVPPS  240
TSELISPISE IGNKRMRSNS LDARGFGDGR GNNYATGFPM DSWDDSAILG DDISSSTGFR  300
DDDVKAYTGL SPSETQDVEA GSRPPTLLAH HLSLPKTATE MAAIEKFLQL QDSVPCKIRA  360
KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKQTNT SDMLDLAVEY IKDLQTQVQL  420
WSSSNLSNPH FPSEETELHE DSTHATLCEK VTYKVKTHGD VYGQTCFFLA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.15479	1e-150	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008384525.2	0.0	transcription factor bHLH130-like isoform X1
Swissprot	Q66GR3	4e-61	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A498IPJ8	0.0	A0A498IPJ8_MALDO; Uncharacterized protein
STRING	XP_008384525.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4185	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-63	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000307685

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]