PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000307605
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24365.3 Da    PI: 9.6803
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000307605genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.91.5e-141051243
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   +ien+s r+ tf kRr+g +KK +E+  LCd+  + i++s++
  MDP0000307605 10 FIENDSSRKATFRKRRTGFMKKMYEINKLCDVPTCAIMYSPD 51
                   8***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.974149IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-20295IPR002100Transcription factor, MADS-box
CDDcd002662.84E-23284No hitNo description
PRINTSPR004041.3E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTRRKPKLAF IENDSSRKAT FRKRRTGFMK KMYEINKLCD VPTCAIMYSP DMPQPDVWPD  60
PSEVRRLIEL LKNVPEKERN KKMVTHGMFL KQRIEKVQEK LNKLKKENRE KELRMAMSQC  120
LAGKPLNGLD FTNLHEMGWM IDEKLKDIAV TKSRKENELA DINQPLVGQP PAHAASANEN  180
TQDAIQLAPW SVGDVLTSKF GDVDDQIMPL GD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKPKLAFIENDSSRKATFRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388915.11e-157agamous-like MADS-box protein AGL80
TrEMBLA0A498IJ481e-156A0A498IJ48_MALDO; Uncharacterized protein
STRINGXP_008388915.11e-157(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2768823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-33AGAMOUS-like 80