PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Regulation |

Basic Information? help Back to Top

TF ID

MDP0000305210

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 581aa MW: 66441.6 Da PI: 8.417

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000305210	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.1	1.1e-08	37	105	8	76
trihelix 8 laLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 l L++ + +e + ++ + ++W+ +++++ g++r+ q + kw+ l ++yk ik++e k ++ +s MDP0000305210 37 LILVNEVAAVEADCLKALSSFQKWKIIAQNCFXLGVSRTLDQYRRKWDALFGEYKGIKQWEAKCRASDS 105 5566666677777777778889****************************************9644433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12056	1.0E-94	324	581	IPR021924	Protein of unknown function DUF3537

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MKPEQTPSQL DRSHRSSGNR RSTRSQVAPD WNPTDELILV NEVAAVEADC LKALSSFQKW 60 KIIAQNCFXL GVSRTLDQYR RKWDALFGEY KGIKQWEAKC RASDSYWVLG IERRKRNGLP 120 ENFDQELFXG IDKLVRVRGN QSDTDPDSDP EDEAEAEXEE LDSEPESKRR KRRSIPQKSC 180 PKENSFRSCK REKLRETHAQ EKLQETHAEE KPVGSGLKAI PTKSLAEERP QKSCVKKKLT 240 NSQRKEEAIS IEEQEKTAAM KLHESAELIR AIVTEKPDHE AAGVKSTGDL QTDFVRCQGD 300 RVIACLGDIV KTLDQLHHLV QEYELCSFKG SLKWWALDHS SCFGKFLSYF TFIFLTVLVP 360 ILTSLSLKLP SGDPISFNKL VQLPESSLAA IGFMTLSGFF RKYGLRQLLF LDGLTDDSGF 420 VRRGYTRELD KAFKYLACIL LPSFFIELAH KIIFFSNVQI SLPHISSSVP VNSIMFVLVL 480 ASWVYRTGVF LLVCVMFRLT CELQILRFEG LYKLFEGHEY ESSIIFQEHV RIRKQLKVTS 540 HRYRFFIIGC MFTITVSQFG ALLLVLASKT EKTFLNSGDL V

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MKPEQTPSQL DRSHRSSGNR RSTRSQVAPD WNPTDELILV NEVAAVEADC LKALSSFQKW  60
KIIAQNCFXL GVSRTLDQYR RKWDALFGEY KGIKQWEAKC RASDSYWVLG IERRKRNGLP  120
ENFDQELFXG IDKLVRVRGN QSDTDPDSDP EDEAEAEXEE LDSEPESKRR KRRSIPQKSC  180
PKENSFRSCK REKLRETHAQ EKLQETHAEE KPVGSGLKAI PTKSLAEERP QKSCVKKKLT  240
NSQRKEEAIS IEEQEKTAAM KLHESAELIR AIVTEKPDHE AAGVKSTGDL QTDFVRCQGD  300
RVIACLGDIV KTLDQLHHLV QEYELCSFKG SLKWWALDHS SCFGKFLSYF TFIFLTVLVP  360
ILTSLSLKLP SGDPISFNKL VQLPESSLAA IGFMTLSGFF RKYGLRQLLF LDGLTDDSGF  420
VRRGYTRELD KAFKYLACIL LPSFFIELAH KIIFFSNVQI SLPHISSSVP VNSIMFVLVL  480
ASWVYRTGVF LLVCVMFRLT CELQILRFEG LYKLFEGHEY ESSIIFQEHV RIRKQLKVTS  540
HRYRFFIIGC MFTITVSQFG ALLLVLASKT EKTFLNSGDL V

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.26606	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375735.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
TrEMBL	A0A498HQN9	0.0	A0A498HQN9_MALDO; Uncharacterized protein
STRING	XP_009375735.1	0.0	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	6e-50	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	MDP0000305210