PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000305167
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARR-B
Protein Properties Length: 248aa    MW: 28617.8 Da    PI: 6.7971
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000305167genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like651.4e-20199248151
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                    k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQ
  MDP0000305167 199 KARVVWSVDLHQKFVKAVHQI-GFDKVGPKKILDLMNVPWLTRENVASHLQ 248
                    68*******************.9***************************9 PP
2Response_reg84.43.4e-28191271109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+vdD+p+ +++l+++l+k  y ev+++  +++al+ll++k+  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga
  MDP0000305167  19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALHLLRQKKdgYDIVISDVNMPDMDGFRLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGA 112
                    89*********************.***************888889**********************6644.8*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     d+l Kp+ ++el++
  MDP0000305167 113 CDYLLKPIRMKELRN 127
                    ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.3E-1311248IPR017053Response regulator B-type, plant
SuperFamilySSF521728.25E-3616139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.3E-4516141No hitNo description
SMARTSM004485.3E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.30318133IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-2519128IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.83E-2920133No hitNo description
Gene3DG3DSA:1.10.10.601.5E-22197248IPR009057Homeodomain-like
SuperFamilySSF466893.76E-13197248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-18199248IPR006447Myb domain, plants
PfamPF002491.1E-6201248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MESSFSSPRN DTFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCGLAR DALHLLRQKK  60
DGYDIVISDV NMPDMDGFRL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRKKIHEI RDIESHESFE GIQFIRSGSD QYDEGYFLSA DDLTSSRKRK  180
DVDNKYDDKD FADLSSTKKA RVVWSVDLHQ KFVKAVHQIG FDKVGPKKIL DLMNVPWLTR  240
ENVASHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ab6_A3e-15171352122CHEMOTAXIS PROTEIN CHEY
1ab6_B3e-15171352122CHEMOTAXIS PROTEIN CHEY
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.161690.0bud| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947593.11e-179LOW QUALITY PROTEIN: two-component response regulator ARR11
SwissprotQ5N6V81e-126ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A498ICU70.0A0A498ICU7_MALDO; Two-component response regulator
STRINGXP_008390110.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-117response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]