PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000303528
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CPP
Protein Properties Length: 921aa    MW: 102319 Da    PI: 7.9899
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000303528genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.14.7e-15252288339
            TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                    +k+CnCk+skClk+YC+Cfaag +C e C+C++C+Nk
  MDP0000303528 252 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQECFNK 288
                    79**********************************8 PP
2TCR50.83.4e-16336375140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    ++k+gCnC+ks+ClkkYCeCf+ g+ C+  C+C +CkN+ 
  MDP0000303528 336 RHKRGCNCRKSSCLKKYCECFQGGAGCGILCRCVGCKNTF 375
                    589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-16250291IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.948251376IPR005172CRC domain
PfamPF036389.6E-11253288IPR005172CRC domain
SMARTSM011149.6E-17336377IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-11338374IPR005172CRC domain
SuperFamilySSF520471.39E-6710849No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
MAFLLQLRDC YAPDYPTTIK ESAGPIYFGE QCGSGKVSNQ PEGIGRTKET DEASAIHSGT  60
LXEKLNVNDP SGIVDEKSPK CIHSSCKPSS QSYAIRRRCL DFERPATYKR KSIDAXGDSS  120
ASVXSSCEVA SVEKQLVQTI KGCDYSSSRL PGIGLHLNAL ATTIESNLST VVKHEVHASE  180
SQAINLPNSK ISSTSLTPSE VSRDESCKDK AQVAVTSPQI CAPGGQEPDH SSPEKKRHAP  240
LKLQPAGESL ACKRCNCKRS KCLKLYCDCF AAGLYCIEPC SCQECFNKPI YENIVLENRK  300
LIESRNPLAF APKVIAKAVA IPQYAEETNS TPSSARHKRG CNCRKSSCLK KYCECFQGGA  360
GCGILCRCVG CKNTFGRKDE AEQAEVGGDE SVDPRKDAVN VSLPTVRDQD LLMAPPGICR  420
PPPGQLTSSS KGRPKIFSLH SVLSSSQHEK HLQAIPEDVT LETLASSCSQ PSGLKSTSPN  480
SKRVSPPHSS DKGGEDGRHV VDIKQYTCIR IQDLKREFPL PSWITFPFQF DLIVFHLITS  540
KVWFDYIIIL PRPAAYGFFY IKKIDRREAI MASNKKXKLQ NPTDSKETNE ERQLKYDIIR  600
EILRLLPTKS SVLMSFLSKQ WQSAWXALPA IHLDFDEEGE PLHDNNDDDN HVXRQHAKFI  660
NMFSWFVGFR EKDKQQQQQL VEKFRIRMVR YSLLEDEATV VDKWLTFGLE RSVKELDISL  720
LGGGGKAGYT LPQTLFTSKS LTTLKLEHVT VNIDRHGNPV SLPSLKTVTL KTVCFNGYSS  780
FRGFIXSSDG DLSPXIENLS IVSCSXVGTD MFWNISIYSS TLKSLEVIDC NCRTISASAG  840
DLESITIVSD YADFKLLNLY GCSKVNYMDI RARHLGTFNV AEFSQSVKEA TLDVPNRCTC  900
LYDCKLHDQR YILSRISAKL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1625337312120Protein lin-54 homolog
5fd3_B6e-1625337312120Protein lin-54 homolog
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028957382.10.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A498K3L50.0A0A498K3L5_MALDO; Uncharacterized protein
STRINGXP_008370890.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.17e-78Tesmin/TSO1-like CXC domain-containing protein