PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000303239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 446aa MW: 50171.3 Da PI: 7.6621 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40 | 8.9e-13 | 56 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G ++W+ +++ g+ R++k+c++rw +yl MDP0000303239 56 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 103 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.3 | 4.9e-15 | 109 | 152 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+ E+ + ++++ lG++ W++Ia++++ gRt++++k++w++ MDP0000303239 109 RGGFTEAEENQMIQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 152 788*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 47 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.517 | 51 | 103 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.69E-27 | 53 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-6 | 55 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-10 | 56 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-4 | 58 | 103 | No hit | No description |
PROSITE profile | PS51294 | 24.011 | 104 | 158 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 107 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 108 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-13 | 109 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.93E-10 | 112 | 152 | No hit | No description |
Pfam | PF06155 | 7.1E-8 | 320 | 381 | IPR010376 | Domain of unknown function DUF971 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MDTTLVKRLC XIWGSSKLHA PLGPWHGNII NMSTCREIEF VTMGRLPCCD KVGLKRGPWT 60 IEEDHKLMNF ILNNGIHCWR MVPKLAGLLR CGKSCRLRWI NYLRPDLKRG GFTEAEENQM 120 IQLHSCLGNR WSKIASHFPG RTDNEIKNHW NTRIKKRLKH LGVDPLTHKP IEEKEHIEEN 180 KDTITQQSNI TSSSSEEGLE ESRGTGLEAK LLEDSNGNKG FPESDEKSQN EVQLTTLDDA 240 NDISENYEVF CGSLDLGTLM LNQGFPNTSS MSNSYSTSFS VEDSNNASIS IGETMQENCL 300 QHHNXEGELW RNKKFAHLYR KVXVEFGNGN VFNLSAEFLR IHSPAVDAKI RSIAGEKVIS 360 GRRHVGIMSA EPVGNYGVSL SVTGAWPDNM GHGLVSSSLR RPKGLQRSCI ERHCHLLFVC 420 LHCNLMQLLC TCKLVGHYTS NLCANV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-27 | 54 | 158 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.4175 | 1e-114 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017183968.1 | 0.0 | myb-related protein 315-like | ||||
TrEMBL | A0A498J625 | 1e-168 | A0A498J625_MALDO; Uncharacterized protein | ||||
STRING | XP_008357861.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6625 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 3e-79 | myb domain protein 40 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000303239 |