PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GATA

Protein Properties

Length: 306aa MW: 33338.9 Da PI: 5.6276

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000303048	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49	8.3e-16	218	253	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg ++ Tp++Rrgp+g+++LCnaCGl+++ +g MDP0000303048 218 CKHCGISSksTPMMRRGPSGPRSLCNACGLFWANRG 253 ***99999********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	2.5E-12	84	119	IPR010399	Tify domain
PROSITE profile	PS51320	14.569	84	119	IPR010399	Tify domain
Pfam	PF06200	1.0E-12	87	118	IPR010399	Tify domain
Pfam	PF06203	5.9E-15	150	192	IPR010402	CCT domain
PROSITE profile	PS51017	12.531	150	192	IPR010402	CCT domain
SuperFamily	SSF57716	1.57E-11	210	268	No hit	No description
SMART	SM00401	5.2E-16	212	265	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	10.027	212	268	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	9.6E-15	216	259	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	5.18E-14	217	267	No hit	No description
PROSITE pattern	PS00344	0	218	245	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.5E-13	218	253	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MTIDSIREPP PMSMYGHSQD MTMPNPIPAC DDDDAGAADS IDNAHIQYDS HTLEDGGIVV 60 VEDVSSDGVY VQGGSASSEL RGPPYDGSSQ LTLSFRGQVF VFDAVTPEKV QAVLLLLGGN 120 ELSPSAQGTE LASQNQRAME DYPRCSQPHR AASLIRFRQK RKERCFDKKV RYGVRQEVAL 180 RMQRNKGQFS SSKRSDGDSN WSAGQESGQE DCHAETSCKH CGISSKSTPM MRRGPSGPRS 240 LCNACGLFWA NRGGLRELSK RSHDIKRIEQ GGEPDTKDLD SVTAIDAHNN LVPFSNGDNS 300 ALVAEN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11117	0.0	bud\| fruit\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269\|PubMed:10945256, ECO:0000269\|PubMed:14966217}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028950378.1	0.0	GATA transcription factor 25-like
Swissprot	Q9LRH6	6e-84	GAT25_ARATH; GATA transcription factor 25
TrEMBL	D9ZIZ3	0.0	D9ZIZ3_MALDO; GATA domain class transcription factor
STRING	XP_008378645.1	1e-167	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	2e-86	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	MDP0000303048

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]