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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000302279 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 300aa MW: 32761.6 Da PI: 7.5623 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 138 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H MDP0000302279 138 FSCNYCKRKFYSSQALGGHQNAH 160 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.04E-6 | 133 | 166 | No hit | No description |
PROSITE profile | PS50157 | 11.406 | 138 | 165 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 140 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MLSLSLCLLL SLSLLLSFSL ISSHRLINRR NKVLDFTACR NMLTQNLNLE FENDSGVMSQ 60 VTSNIPLQEE SPDASKDSTT TSSCLTNQTN HQQQDPGPVA LDLTLQFCSS DIELKGTGET 120 SSEGAAPPTS EGTNPRVFSC NYCKRKFYSS QALGGHQNAH KRERTMAKRA MRMGMFPDRY 180 TSLASLPLHG SAASAFRSLG IQAHSAVHQN TMVSSDHPRF PVPDTRGVAR FQQGYFGVPV 240 FMDEDDEGMF WPGSFRQVGK EGVGGHYNVQ SAQNPNMNSG TSSAPRNNTS SSSPDLTLKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12641 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008358279.1 | 0.0 | zinc finger protein 7-like isoform X1 | ||||
Refseq | XP_008358280.1 | 0.0 | zinc finger protein 7-like isoform X1 | ||||
Swissprot | Q39263 | 3e-44 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A498HLH1 | 0.0 | A0A498HLH1_MALDO; Uncharacterized protein | ||||
STRING | XP_008358279.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 3e-45 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000302279 |
Publications ? help Back to Top | |||
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